Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44850 317 / 1e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028204 [exp] 545 / 0 AT2G44850 347 / 1e-118 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137300 [exp] 340 / 1e-116 AT2G44850 379 / 2e-132 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10561 [flax] [poplar] UPF0565 Uncharacterised protein family UPF0565
Representative CDS sequence Show only first row Show all	>Lus10042906 pacid=23181899 polypeptide=Lus10042906 locus=Lus10042906.g ID=Lus10042906.BGIv1.0 annot-version=v1.0 ATGATCGTTCGTCCTTGTGGGATGGAGCGTTGGAAGGGCGTCCTGAAGGTTGTGTTGAAGCCACAAACTCCTCTTTACACAGTCGCGGTCTCACTCTGCC TCTCAACCAATTCCTTAAACCCTAACCGTGAGTCAGCGAATGCCATTCTGTTCCATCGAGACCGAGTCGCCGGAACTGACAGTCCAGTGATTGAGAAGCT TTCCGACTCGCAGAGGATAGCTGACATTTTGGTCTCAAAGTTTGGGGATTCTGTTAACGCCTGGGTAATCGAAGCTTCTGCGTACAATGGCCCCTTTGCT ATCAACCGAGATTTCATCCCCACCGTTAATCGATGGGGGGAACCCAAATATTACGACCCTTCAGGCTTCCCAGCTTCCACTTCCATTGTCTCCCTACTGT CAAATTGCTTCAACGAGGTATGGAAAGCTGTTTCAGCCACAACATCACAGCCATGGGAGCCAATGGTGATGTTCCCAGCCTCCTACACTCCTGCTACTTA CATCCTTGGATTCAGCAAGGGTGGCACTGTGATTAACCAGCTAGTCACCGAGCTGAGCTGTTTGGGATCGAACTCCGTTTTGCAAGAACCGACTCATCAG ATAGTACCCGGTAGCAAAGAGGACTTCTTGAACAGTATCTCCGACATTCACTATGTTGATGTTGGGTTGAACTCTACTGGTGCATACATCACCGACTGCG GGGTGACTGAGACAATCGGTAAGCGCTTGAACGTGGAAGGTGCAGGACGACGACAAGGAGCAGCTCAAGGAATTCGGTTCGTGCTCCATGGAACTCCAAG GCAATGGGGGGACGACAAGAGGGTTTGGATACGAGAGGAGAAGGACGAACTAATGCGTCTTCTAGAATGTGAAGCTGGAAGGACCGGAGGGAAGTTGCTG GTTTGCCAGAAGGTTTATTTCTCTGAAAGGGTCCCTGATATGGAAATGCACTTTGAGATCATTGAAGCCATGGACGTCAGATAA
AA sequence Show only first row Show all	>Lus10042906 pacid=23181899 polypeptide=Lus10042906 locus=Lus10042906.g ID=Lus10042906.BGIv1.0 annot-version=v1.0 MIVRPCGMERWKGVLKVVLKPQTPLYTVAVSLCLSTNSLNPNRESANAILFHRDRVAGTDSPVIEKLSDSQRIADILVSKFGDSVNAWVIEASAYNGPFA INRDFIPTVNRWGEPKYYDPSGFPASTSIVSLLSNCFNEVWKAVSATTSQPWEPMVMFPASYTPATYILGFSKGGTVINQLVTELSCLGSNSVLQEPTHQ IVPGSKEDFLNSISDIHYVDVGLNSTGAYITDCGVTETIGKRLNVEGAGRRQGAAQGIRFVLHGTPRQWGDDKRVWIREEKDELMRLLECEAGRTGGKLL VCQKVYFSERVPDMEMHFEIIEAMDVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44850			unknown protein		Lus10042906 [exp]	0	1
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	9.6	0.8146
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	16.0	0.8276
AT5G64816			unknown protein		Lus10009081 [exp]	17.3	0.8204
AT3G52230			unknown protein		Lus10038643 [exp]	18.2	0.8078
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	21.0	0.8238
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	22.2	0.7636
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	24.9	0.7882
AT4G38495			unknown protein		Lus10029400 [exp]	26.4	0.7751
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	28.5	0.8030
AT1G06980			unknown protein		Lus10006211 [exp]	39.2	0.7931

Compare expression of checked genes

Lus10042906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.