Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02090 385 / 5e-136 ATCSN7, COP15, CSN7II, FUS5 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028205 [exp] 435 / 8e-156 AT1G02090 355 / 2e-125 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10004367 [exp] 246 / 7e-81 AT1G02090 265 / 1e-89 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10040162 [exp] 221 / 1e-71 AT1G02090 244 / 1e-81 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10010423 [exp] 42 / 0.0006 AT4G19006 651 / 0.0 Proteasome component (PCI) domain protein (.1) Lus10012120 [exp] 41 / 0.0009 AT4G19006 665 / 0.0 Proteasome component (PCI) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137400 [exp] 437 / 2e-156 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.014G047200 [exp] 429 / 2e-153 AT1G02090 394 / 5e-140 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.003G081066 [exp] 152 / 9e-46 AT1G02090 179 / 1e-57 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.001G153900 [exp] 114 / 4e-31 AT1G02090 87 / 1e-21 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10042908 pacid=23181823 polypeptide=Lus10042908 locus=Lus10042908.g ID=Lus10042908.BGIv1.0 annot-version=v1.0 ATGGATATCGAACAGAAACAAGCAGAAGTGATCGATCATTTCGTGAAGCTAGCTTCTTCGCTTACTGGTTCAGCCATTGAGCCGCTTGTCGTCGAGGCTA CTTCCAACCCTTCCCTCTTCGCCTTCTCAGAGATTCTCGCCGTGCCTAGCGTCGCCGGGCTTGAAAGGACCGAGAATTCCACGTTGCTTGATACGCTCCG ATTGTTCGCACATGGAACATGGAGCGATTACAAGGGTATGCAACCGATCCATTTCAATTTGTTTACTGTTGTGACACCTGCAATCTTATCCGCTCTATTG GCAGATAATGCTGGTAGTCTTCCTCAGTTGGTGCCTGCACAAATCCTTAAGCTGAAGCAACTTACGGTGCTCACGCTCGCTGAGTCGAACAAGGTACTTC CATACAATCAGCTCATGCAGGAATTAGATGTTACTAATGTTCGTGAACTTGAAGACTTCCTCATTAATGAGTGTATGTATGCGGGAATTGTAAGAGGAAA GCTTGATCAGTTGCGAAGGTGCTTTGAGGTACAATTTGCAGCTGGGAGAGATCTCAGGCCTGGACAACTTGGCAATATGCTACATACTCTGTCAGACTGG TTGGCTACGTCAGACAATCTTCTTATGACTATCCAAGATAAAATCAAGTGGGCTGATACAATGAGTGAAGCAGACAAGAAGCACCAGAAGGATGTAGAAG ATAGGGTGGAAGAAGTTAAGAAGACTCTTTCTGTCAAGGCGGATGCTGAATTCCGAGGGCACGAGGAGATTTACTCCGAACCAGGTGGAGTGATGGACTA TGAGGAAGATCGAAGCCGTCCCAAGAGGTATTTGATTCTGAAAGCTCACTCATTTGCATATCACGATTACAGTGTTGTTCTTTCTTCCAGTCTGGTTCAA TTAACTAGTTAA
AA sequence Show only first row Show all	>Lus10042908 pacid=23181823 polypeptide=Lus10042908 locus=Lus10042908.g ID=Lus10042908.BGIv1.0 annot-version=v1.0 MDIEQKQAEVIDHFVKLASSLTGSAIEPLVVEATSNPSLFAFSEILAVPSVAGLERTENSTLLDTLRLFAHGTWSDYKGMQPIHFNLFTVVTPAILSALL ADNAGSLPQLVPAQILKLKQLTVLTLAESNKVLPYNQLMQELDVTNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGNMLHTLSDW LATSDNLLMTIQDKIKWADTMSEADKKHQKDVEDRVEEVKKTLSVKADAEFRGHEEIYSEPGGVMDYEEDRSRPKRYLILKAHSFAYHDYSVVLSSSLVQ LTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10042908 [exp]	0	1
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	3.9	0.6716
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	19.1	0.6171
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	23.3	0.6411
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001091 [exp]	28.2	0.6503
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	32.7	0.6357
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	39.8	0.6038
AT3G07640			unknown protein		Lus10036423 [exp]	46.6	0.6263
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	46.9	0.6431
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	50.9	0.6126
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	52.6	0.6463

Compare expression of checked genes

Lus10042908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.