Plant FIBer expression Database

Lus10042909 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02100 471 / 2e-167 SBI1 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028206
[exp]
610 / 0 AT1G02100 513 / 0.0 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G047300
[exp]
494 / 4e-176 AT1G02100 530 / 0.0 SUPPRESSOR OF BRI1, Leucine carboxyl methyltransferase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF04072 LCM Leucine carboxyl methyltransferase
Representative CDS sequence
>Lus10042909 pacid=23181989 polypeptide=Lus10042909 locus=Lus10042909.g ID=Lus10042909.BGIv1.0 annot-version=v1.0
ATGTCGAAGACCGGTGCCGATTCCACGAGCACCACTGCAGCTGTTCAAGCCACCAACGACGACGCTTCCGCCAGTAAACTGTCTTGTGTGAAGAAGGGAT
ACATCAAAGATGACTATGTCCATTTGTTTGTGAGGAGGCCCGTGAGAAGATCTCCAATTATCAATCGTGGATATTTTGCTCGTTGGGCTGCTTTCCGGAA
GCTTCTCAATCAATTTCTCGACTGTGAGATTCTTGGTAATGAGAAGGGCCAGACGAAGAAGCAGATATTATCACTTGGAGCAGGGTTTGATACAACGTAC
TTCCAGTTGCAGGTCTTGTATATCTTAATGGGGGGTTACACTGGTGTTCTGAATACTGGGCATGCTTTATTTCTGTGTAATGGGTCCAATTTGATGAAGC
TCCGGGATGAAGGGAGAGCACCATTTTTATACGTGGAACTGGATTTCAAGGAGGTCACTAGTAAAAAGGCAGCTATCATTGAAACCCAAAGCCAGCTGCG
AGACAGAGTTGGTCCTGCAGCTTCAATCTCACGAGAGAATGGTGAAGTGCTTAGTGATCATTACAAGCTTCTCCCAGTTGATTTGCGTGACATACCAAAG
CTGGATGATGTTATAGCTTTTGCTAATATGGATCCTAGCTTGCCAACATTTATAATTGCAGAATGTGTTTTGATATACTTGGATCCAGTTTCAACCCGTA
ATATAGTTAGCTGGGCATCAAACGCATTTTCAACAGCTGTGTTTTTCCTATATGAGCAGATTCTCCCAGATGATGCTTTTGGACAGCAAATGATCAGAAA
CTTAGAGAGTCGAGGATGTGCACTGTTGGGAATTGATGCCACACCCACTCTATTTGCAAAAGAGAAACTTTTTCTTGAACAAGGATGGGAGAAAGCTGTT
GCTTGGGACATGCTAAAAGTTTATAGTGAGTTCATCGAAGTTGCAGACAGACGAAGGATCGAACGGTTGGAGTTATTCGACGAGTTTGAAGAGTGGTACA
TGATGCAGGCAAGCCAGAGCACTACTGCGTGGCGTATGCAATCAATGATTCCATGGCACTGTTCAGAGGGTACGGATTTCCAAACCGTCAGCCGGCAGTT
GTCAGAGACGATGACAGCCGCCGTGCCTCACCGTGAGAGGAAAATAGCAGAGTCTGTTACCTACACCAGGGACAAGTTCCCCCCCAGAGATGGGGAAGCT
GTGCGTGTCAGGTGA
AA sequence
>Lus10042909 pacid=23181989 polypeptide=Lus10042909 locus=Lus10042909.g ID=Lus10042909.BGIv1.0 annot-version=v1.0
MSKTGADSTSTTAAVQATNDDASASKLSCVKKGYIKDDYVHLFVRRPVRRSPIINRGYFARWAAFRKLLNQFLDCEILGNEKGQTKKQILSLGAGFDTTY
FQLQVLYILMGGYTGVLNTGHALFLCNGSNLMKLRDEGRAPFLYVELDFKEVTSKKAAIIETQSQLRDRVGPAASISRENGEVLSDHYKLLPVDLRDIPK
LDDVIAFANMDPSLPTFIIAECVLIYLDPVSTRNIVSWASNAFSTAVFFLYEQILPDDAFGQQMIRNLESRGCALLGIDATPTLFAKEKLFLEQGWEKAV
AWDMLKVYSEFIEVADRRRIERLELFDEFEEWYMMQASQSTTAWRMQSMIPWHCSEGTDFQTVSRQLSETMTAAVPHRERKIAESVTYTRDKFPPRDGEA
VRVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Lus10042909
[exp]
0 1
AT5G47630 MTACP3 mitochondrial acyl carrier pro... Lus10039077
[exp]
12.4 0.5691
AT5G06810 Mitochondrial transcription te... Lus10018548
[exp]
22.5 0.5528
AT1G17350 NADH:ubiquinone oxidoreductase... Lus10035323
[exp]
24.2 0.4773
AT2G26980 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.... Lus10021488
[exp]
25.7 0.5321
AT4G26055 unknown protein Lus10001708
[exp]
32.6 0.5174
AT1G07210 Ribosomal protein S18 (.1) Lus10039100
[exp]
37.5 0.5227
AT5G02440 unknown protein Lus10016560
[exp]
48.7 0.5132
AT1G74340 DPMS2, DPMS dolichol phosphate mannose syn... Lus10035381
[exp]
58.4 0.4952
AT2G13690 PRLI-interacting factor, putat... Lus10033484
[exp]
82.8 0.4736
AT4G10955 alpha/beta-Hydrolases superfam... Lus10032396
[exp]
83.2 0.4403

Lus10042909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.