Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60320 647 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 632 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 256 / 1e-75 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT2G34670 198 / 5e-55 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 136 / 2e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 126 / 5e-31 unknown protein AT1G21740 115 / 1e-26 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 105 / 2e-23 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 92 / 5e-19 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 91 / 7e-19 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028207 [exp] 659 / 0 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 265 / 6e-80 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 259 / 1e-79 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10036155 [exp] 203 / 9e-57 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025777 [exp] 145 / 3e-36 AT1G52320 652 / 0.0 unknown protein Lus10022116 [exp] 144 / 5e-36 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 140 / 1e-35 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 140 / 1e-34 AT1G52320 747 / 0.0 unknown protein Lus10024007 [exp] 139 / 2e-34 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047400 [exp] 726 / 0 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 667 / 0 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G056700 [exp] 268 / 3e-81 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 261 / 2e-78 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.001G181100 [exp] 151 / 2e-38 AT1G52320 615 / 0.0 unknown protein Potri.009G137500 [exp] 149 / 1e-37 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.003G054800 [exp] 147 / 4e-37 AT1G52320 626 / 0.0 unknown protein Potri.004G177200 [exp] 144 / 4e-36 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.018G036400 [exp] 144 / 5e-36 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 140 / 9e-35 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10042910 pacid=23181684 polypeptide=Lus10042910 locus=Lus10042910.g ID=Lus10042910.BGIv1.0 annot-version=v1.0 ATGTCCAATTTCACAGCTAATAATAATAATTACGGCGGCTTTCCAACTGCTTATCAAGCCGATTCCACCTACACCGCCACGCCTTCTCAGGCCTCCTCTG TCTGGAACTGGGAGAATTTCTATCCTCCTTCTCCTCCTGATTCAGAGTTCTTCAATCACAAAGCTCCTCCTCCTCCTCCTTCGTCGCAGAAGCAGCACCT TGACGTCACCGATGCCGACGATGAGAGGAATACTGAGACCGAAACCGAGCGATCTGAGTACGATTTCTTCCACAAGAAGCAGGGGTATACGGAGAATCCC TTCGCCGGCGTCCGGGAAGAGGCGGAGGAGCCGCCGGAGGAAGTTCACTGCAGCGAATGGGGGGACCACCACGATCGTTACAGCACCACCAGCTCCTCCA GCCAAGAGGAGGAGGAAGAAGAAGAAGGCCAGGCCAGATCCGACATCGGGACGCGGTCGTCCGTCAAGTATCAATCTGAGAAGCAGCAATCTCCTCCGCC GCCGCCGCCGCAGATATATCGGAAGGCTAGTAAGTCCGATGGAGCGGGTTCGTCAGCTAGTTTCAGGACGAAAGACATGTCCAATACGAAAATGGTGGTG AGGCACAAGGATTTGAAGGAGATCGTCGAGTCCATCAATGAGAATTTCGAGAAGGCTGCTGCCGCCGGCGACCAGATATCGGAGCTTCTCGAAATTGGCA GCGCTCAGCTCGAGCGCAGTTTCCGTCAGCTAAAGAAGACGGTTTATCATTCGAGTAGTGTCTTGAGCAACTTGAGCTCGAGCTGGACCTCGAAACCGCC ATTGGCAGTGAAGTACCGGGCTAGAGAATGTGTGAAGATCGAGCATGAAAAGAAGCTGTCGACCCTTCAGAGTCAAGAGTATAAAGGGCAAGATGGAAGT AAGCTAGACAAGACAAAGACTTCAATCAACAAGCTCCAGTCTTTAATCATCGTCACCTCTCAGGCTGTTTCCACTACTTCTACCGCCATTGTTGGCCTTA GAGACGCAGATCTCGTTCCTCAATTGGTTGATCTCTGCCACGGATTCATGTACATGTGGAAGTCGATGCATGAGTACCACGAAGTACAAAACAGCATTGT GCAGCAGGTGAGCGGCCTAGTGAACAGAACGATGAACGGCCACTCAACTTCTGAGTTGCACAGGCAAGCAACTCGTGACCTGGAGTCAGCCGTCTCAGCT TGGCATTCCAGTTTCTGCCGCTTGATAAAATTCCAGCGAGACTTCATCCGGTCCGTCCAAACCTGGTTCAAGCTCACCCTACTTCCAGTCAGCAACGACA CTGCCACCGGAGCGATAGAACGTTCCGATGTTTACGCCTTCTGCGACGAGTGGAAGCTAGCCCTCGACCGAGTCCCCGACACAGTTGCTTCGGAAGCTAT AAAGAGCTTCATCAACGTCGTACATGTCATATCGGTGAAGCAAAGCGAGGAGCTCAAGATCAAAAGGAGAAGTGAGACCGCGTCAAAGGAGCTGGAGAAG AAGGCTTCTTCGCTACGTAACATAGAGAGGAAATTCTACCATTCTTACTCCATGGTGGGCGTAGGCATCCCTGAGAATGAAGCAGGACCTGGCGGACTGG ATGCTCGGGATCCCTTGTCTGAGAAGAAATCGGAGCTGGCGGCTTGCCAGAGGCGAGTGGAGGATGAAATGTTGAAACATGCAAAGGCAGTGGAGGTTAC TAGATCGATGACGCTAAATAATCTGCAGACGGGGTTGCCTGGGGTTTTCCAGGCGTTGACGAGCTTCTCTGCGTTGTTTACGGAGGCGCTTGATACCGTG TGCAGACGTTCGTATGGTATCAAATAG
AA sequence Show only first row Show all	>Lus10042910 pacid=23181684 polypeptide=Lus10042910 locus=Lus10042910.g ID=Lus10042910.BGIv1.0 annot-version=v1.0 MSNFTANNNNYGGFPTAYQADSTYTATPSQASSVWNWENFYPPSPPDSEFFNHKAPPPPPSSQKQHLDVTDADDERNTETETERSEYDFFHKKQGYTENP FAGVREEAEEPPEEVHCSEWGDHHDRYSTTSSSSQEEEEEEEGQARSDIGTRSSVKYQSEKQQSPPPPPPQIYRKASKSDGAGSSASFRTKDMSNTKMVV RHKDLKEIVESINENFEKAAAAGDQISELLEIGSAQLERSFRQLKKTVYHSSSVLSNLSSSWTSKPPLAVKYRARECVKIEHEKKLSTLQSQEYKGQDGS KLDKTKTSINKLQSLIIVTSQAVSTTSTAIVGLRDADLVPQLVDLCHGFMYMWKSMHEYHEVQNSIVQQVSGLVNRTMNGHSTSELHRQATRDLESAVSA WHSSFCRLIKFQRDFIRSVQTWFKLTLLPVSNDTATGAIERSDVYAFCDEWKLALDRVPDTVASEAIKSFINVVHVISVKQSEELKIKRRSETASKELEK KASSLRNIERKFYHSYSMVGVGIPENEAGPGGLDARDPLSEKKSELAACQRRVEDEMLKHAKAVEVTRSMTLNNLQTGLPGVFQALTSFSALFTEALDTV CRRSYGIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60320			Protein of unknown function (D...		Lus10042910 [exp]	0	1
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	2.0	0.7391
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	10.4	0.6617
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	18.2	0.6168
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	19.6	0.6215
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	38.1	0.5223
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	38.9	0.5963
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	44.8	0.6183
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	45.0	0.6205
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	55.8	0.5684
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	62.6	0.5749

Compare expression of checked genes

Lus10042910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.