Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44830 665 / 0 Protein kinase superfamily protein (.1) AT5G47750 620 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 581 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 570 / 0 D6PK D6 protein kinase (.1) AT5G40030 537 / 0 Protein kinase superfamily protein (.1) AT1G79250 525 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G27580 515 / 6e-179 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT1G16440 498 / 2e-173 RSH3 root hair specific 3 (.1) AT3G12690 499 / 6e-173 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G03640 491 / 7e-165 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028208 [exp] 747 / 0 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 603 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 600 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 596 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 561 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022534 [exp] 537 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 528 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 528 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 486 / 7e-166 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137700 [exp] 764 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 748 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 622 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 615 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 583 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 541 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 533 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.010G175900 [exp] 531 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 514 / 7e-174 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 506 / 9e-172 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042911 pacid=23181817 polypeptide=Lus10042911 locus=Lus10042911.g ID=Lus10042911.BGIv1.0 annot-version=v1.0 ATGAGCATTATCCATAGCTGTGGTGGCAGTACATATCGGAGTGATGCTATGTCGAGCGATGGTATGTTCAGTATGGACAGAAACTATGAGAGTACGAAAG GGAGTAGTGTTAGTGTTAGTGGAATTAGAAGGGATTCTCTGGAGAGTGGGAGCCGAGCGAGCGATAGCAGTGGCCTTAGTGATGATAGCAACTGGAGCAA CATCACTGGAAGTGCGAACAAACCTCACAAAGGGAATGATCCGAGGTGGAAGGCGATTCTTGCGATCCGAGCTCGCGATGGAATGTTGGGGATGAGTCAT TTCAGATTGCTGAGACGGCTTGGTTGTGGTGACATTGGTAGTGTTTACCTGTCTGAACTTAGTGGGACTCGATGCTATTTCGCTATGAAGGTGATGGACA AGGCTTCCCTTGCCAGCAGGAAGAAGTTGACAAGGGCTCAGACTGAAAGAGAGATTCTTCAACTCTTGGATCATCCTTTCCTCCCTACATTGTACACCCA TTTCGAGACTGATCGATTCTCGTGCTTGGTCATGGAGAACTGCCCTGGTGGCGACTTGCATGCTTTGAGACAACGCCAGCCCGGGAAGCACTTCTCTGAG TATGCTGCAAGATTTTATGCCGCAGAGGTGTTATTGGCTCTGGAATACCTGCATATGCTTGGAGTAGTGTACCGAGACTTGAAGCCGGAAAACGTGCTTG TTCGTGATGATGGCCATATAATGCTTTCAGATTTCGACCTTTCCCTTCGCTGTGCAGTTTCACCCACCTTGATAAGGACATCTCACGATTCAAATCCATC AAAGCGGGGCGGTACTTTCTGTGTTCAACCTACTGCTTGCATTGAACCGGCATCAGTATGCATTCAGCCAGCATGCTTCATTCCTCGTCTCTTCCCTAAC AAGAAGAAAAACCAAAAGAAGCCTCCTCATAGGACCGATCTCGGATTGCCATCGCTTCCGGAGCTGGTGGCAGAGCCAACTGCAGCTCGATCCATGTCGT TCGTAGGGACCCACGAATACCTTGCCCCTGAGATAATAAAGGGGGAAGGACATGGCAGTGCTGTTGACTGGTGGACATTTGGGATCTTCCTCCATGAACT ACTCTACGGTAAAACGCCTTTCAAGGGATCAGGAAATCGAGCTACGTTGTTCAATGTAGTAGGGCAGCAGCTGAAGTTCCCTGAAGCACCAGCAACAAGC TACGCGAGTCGCGATCTGATCCGTGGCTTGCTAGTGAAGGAACCCCAGCAGAGGGTTGGAGTGAAGAGAGGAGCAACGGAGATAAAGCAGCATCCTTTCT TTGAAGGAGTGAATTGGGCTCTAATTCGGTGCAGTACTCCGCCGGAAGTCCCTAGACCTATGGAGGAGGCTCAGCTGGCGCCCCAGAAGTACGGTGCTGC TCCTGCTCCTGCTGCTGTGAAGAGGTCAGTTGGAGTTGAGAACACTAGTAAAAGAATGGTGGCTCAAACTCAAACAGGAGACGTGATGAAGTCCGGGGGT AAATATCTGGATTTCGAGTTCTTTTAG
AA sequence Show only first row Show all	>Lus10042911 pacid=23181817 polypeptide=Lus10042911 locus=Lus10042911.g ID=Lus10042911.BGIv1.0 annot-version=v1.0 MSIIHSCGGSTYRSDAMSSDGMFSMDRNYESTKGSSVSVSGIRRDSLESGSRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGMLGMSH FRLLRRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMENCPGGDLHALRQRQPGKHFSE YAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSHDSNPSKRGGTFCVQPTACIEPASVCIQPACFIPRLFPN KKKNQKKPPHRTDLGLPSLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPEAPATS YASRDLIRGLLVKEPQQRVGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEEAQLAPQKYGAAPAPAAVKRSVGVENTSKRMVAQTQTGDVMKSGG KYLDFEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	1.0	0.9230
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	2.0	0.8893
AT3G51650			unknown protein		Lus10009097 [exp]	2.6	0.8718
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	2.8	0.8932
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	4.0	0.8562
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	4.2	0.8923
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	4.2	0.8807
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	6.2	0.8188
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	6.3	0.8888
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10007101 [exp]	7.4	0.8661

Compare expression of checked genes

Lus10042911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.