Plant FIBer expression Database

Lus10042912 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44830 49 / 3e-07 Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028208
[exp]
296 / 3e-98 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G047500
[exp]
112 / 5e-29 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1)
Potri.002G137700
[exp]
106 / 7e-27 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10042912 pacid=23181945 polypeptide=Lus10042912 locus=Lus10042912.g ID=Lus10042912.BGIv1.0 annot-version=v1.0
ATGCACAAGTTTTCTGAATCAAGGGGTCCTGGTGGGAGTAGGGGGCAATTGCCTCCTCAGTTGCAGATAGGTTTAGTTAGAGAAGCTGTGGAAAAGTTAA
ATTCCAAACAAGACAAGTTCAATTCCAAACAAGATGTTCACATCACTGGATTTCCCATCCCTGTAAGGCCATGGAAAGGAAAAGACACTATCTTTCAGCT
ACAAGAGGAGCTAGTAATGTCTAAGGTTAGTGGTGATTCTATTGATGAAGCTGCTGATGGATCTACTAGTATCTCTTTCTCTGGGGCTACTCATCCTGCT
GAACCCGTTGATACAGATCCCATGAGAACAACTGTCTTTGTACCCCTTGGCCAAACCAAATCCGAAAGTGGACGTCTTTTGACATCTATGTCTCTCAACA
TAGAGGATGTTCCTACTAACAAACCAAGTTCAGTTCTTTCACCACCTGATAGTTTGGGTGAAGAAGAAGAAGAAGCCAATGATGACTTGGTCTCTTTTGG
TGGAAGAAGAAGAAGAAGCCAATGA
AA sequence
>Lus10042912 pacid=23181945 polypeptide=Lus10042912 locus=Lus10042912.g ID=Lus10042912.BGIv1.0 annot-version=v1.0
MHKFSESRGPGGSRGQLPPQLQIGLVREAVEKLNSKQDKFNSKQDVHITGFPIPVRPWKGKDTIFQLQEELVMSKVSGDSIDEAADGSTSISFSGATHPA
EPVDTDPMRTTVFVPLGQTKSESGRLLTSMSLNIEDVPTNKPSSVLSPPDSLGEEEEEANDDLVSFGGRRRRSQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44830 Protein kinase superfamily pro... Lus10042912
[exp]
0 1
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Lus10018459
[exp]
3.2 0.9097
AT3G07890 Ypt/Rab-GAP domain of gyp1p su... Lus10012363
[exp]
4.7 0.8381
AT5G46070 Guanylate-binding family prote... Lus10013965
[exp]
4.9 0.8768
AT1G65380 AtRLP10, CLV2 clavata 2, Receptor Like Prote... Lus10026993
[exp]
6.5 0.8774
AT2G44830 Protein kinase superfamily pro... Lus10042911
[exp]
8.5 0.8658
AT3G22440 FRIGIDA-like protein (.1) Lus10010560
[exp]
8.8 0.8613
AT4G15410 PUX5, ATB' GAMM... serine/threonine protein phosp... Lus10030005
[exp]
8.9 0.8605
AT2G44830 Protein kinase superfamily pro... Lus10028208
[exp]
9.9 0.8559
AT4G11450 Protein of unknown function (D... Lus10035493
[exp]
10.2 0.8713
AT2G39870 unknown protein Lus10040247
[exp]
10.8 0.8742

Lus10042912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.