Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02120 460 / 3e-155 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT3G59660 69 / 7e-12 C2 domain-containing protein / GRAM domain-containing protein (.1) AT5G50170 54 / 4e-07 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G03370 54 / 5e-07 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028209 [exp] 1034 / 0 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10027067 [exp] 62 / 1e-09 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10025600 [exp] 61 / 2e-09 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10037679 [exp] 58 / 2e-08 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 58 / 2e-08 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 58 / 2e-08 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 56 / 1e-07 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047600 [exp] 595 / 0 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.002G137800 [exp] 439 / 2e-149 AT1G02120 459 / 6e-158 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.013G127000 [exp] 72 / 7e-13 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.015G083500 [exp] 60 / 6e-09 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.006G003200 [exp] 52 / 9e-07 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 52 / 2e-06 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10042913 pacid=23182015 polypeptide=Lus10042913 locus=Lus10042913.g ID=Lus10042913.BGIv1.0 annot-version=v1.0 ATGGCTACAGTCTCTGCAAGTGCTGAGAGGATCGACTTCTTGCAGAAAACCGACGCCTCTCCCTCAGGATCACCCTCTAGCTCGGGTTCCCATTCCTCTT CTTCCTCCGTCGCTAAAACGCCTGGTTTCAACGACCTCTCCAATTCTTCTGTGCCTCTGAGCAGTCGGGATGCTGAAGCTCAGTCTGTATTATCATTGCG AAATGAAGAGTATAGACGACTATTCCGCCTCCCTTCCGATGAAGTAATTGTACAAGATTTCAACTGTGCGTACCAGGAGAATCTTCTTCTTCAGGGGCAC ATGTATATCTTTGTTCATTATATTTGCTTTTACTCAAACATATTTGGATTTGAGACAAAGAAGATAATCCCATTCCAAGAAATTACAAGTGTAAATAGAG CAAAGACAGCAGGGATCTTCCCAACTGCAATCGAAATTATAGCCGGGGATAAAAAGTACTTCTTTGCATCTTTCCTGTCACGAGATGAAGCTTTCAAGAC TATCAATGATGGATGGCTCCAGCATGGTACTGGCTCCAAAGGCGCAGTGGGAGAACTTCAGGAATCAGTATCAAGGTCCATTAGCCAAGACAATGGCACT GGTAAAATAGAGAAGGCCAGTAGCTCAAAAAACGTAAATGAGTTGGACTCCAATGACAGGCAACAGAATGATCCTTCCCCAAGCGACTCAAGTCCTTCCT CGTGCAATGAAGATGATGCTGTGCTGATAACAGCCCAGTTGGAAGAGAATGTGGCTCATCTTGTTGTGCACGCAGAAGACGTCAACTCTTCATCTTCAAA TGGACCTTGCATGTGGACTGAAGAAAATTGTGATGCTCCGGATATTGCAGCATTATTTACGAAGGTCGGAGAAACAAAGTTCCAGATAAAAGTTGAAGAG TTCTTCAGTTTGTTTTTCTCGGATGATTCCACCGGCTTTACCGAATCTTTCCACAGCAAATGTGGTGATAAAGATTTCAGATGTACTTCGTGGAAGCCAG ATGAGAAGTTTGGACATGTTCGTAATGTGTCATTTCTGCATCCGATAAAGATCTATTTCGGTTTTTATCTTTTGTTGAAAGGTGCAAGATTTGGGAGCTG TCAGGAGGTTCAAAAATTTCAAGTATACAAGAATGGACATCTTGTTATTGGGACATCTCAAGAAATCAATGACGTACCTTATGGGGATTATTTTAGTGTT GAGGGACTTTGGGATGTTGTTAAAGATGTAGATGGATCAAATGAGGGATGCATTTTGGACGTGTACGTGGGTGTTGCATTCAGCAAGAAGACTGCGCATG AATTTTTGAAGCAGAAGAACCTTGAGAAACAAGAGGAAGTTCGTCCTGCTGGTTCATCTGCAAATCCCGAAGTCCATTCCGAAATCGAGTTAAGGAATGG AGATGCTTCAGAAAGGGCATCACTCTTGTTCAGTGATCACAATTCCCCACAAATGGCAGATTCATCAGTAGTTGCCAGGCAACACGCCAGTAGCTTTGTG CATCAGAATACAGCTAATGGCCCACCTATGTTGTCGTTCCTCGGGGGATACAGGACAAGACTATGTACATTTTTCAAGAGACAAAGCCAAGTTTCTATGA TCTTGCTAGTCGCGTTTGTGTTGATATTTCTCATGCAGGTAAGCATAGTAGTGCTGTTAAACAGGCCGCAACTGCAACAGGTTGTCATGACTTCTTCGCC GCCTGGAGAGGAATTCGGTAGAGATTGGGGCAGTGAACAATCATCATCAGAAGCAGCATGGGTAGAGAGACGGATATACCTCCTCAAAGAGGAGATGCTA ATGGCGGAGACTAGACTGGAGAGATTGAGGCAGGAGCATGGGTGGTTGAAACAGCAGATTAAGGACTTGGAGACTAGTACTACTACTACTACTATTAGTG CTTCAAAGACTAAATAA
AA sequence Show only first row Show all	>Lus10042913 pacid=23182015 polypeptide=Lus10042913 locus=Lus10042913.g ID=Lus10042913.BGIv1.0 annot-version=v1.0 MATVSASAERIDFLQKTDASPSGSPSSSGSHSSSSSVAKTPGFNDLSNSSVPLSSRDAEAQSVLSLRNEEYRRLFRLPSDEVIVQDFNCAYQENLLLQGH MYIFVHYICFYSNIFGFETKKIIPFQEITSVNRAKTAGIFPTAIEIIAGDKKYFFASFLSRDEAFKTINDGWLQHGTGSKGAVGELQESVSRSISQDNGT GKIEKASSSKNVNELDSNDRQQNDPSPSDSSPSSCNEDDAVLITAQLEENVAHLVVHAEDVNSSSSNGPCMWTEENCDAPDIAALFTKVGETKFQIKVEE FFSLFFSDDSTGFTESFHSKCGDKDFRCTSWKPDEKFGHVRNVSFLHPIKIYFGFYLLLKGARFGSCQEVQKFQVYKNGHLVIGTSQEINDVPYGDYFSV EGLWDVVKDVDGSNEGCILDVYVGVAFSKKTAHEFLKQKNLEKQEEVRPAGSSANPEVHSEIELRNGDASERASLLFSDHNSPQMADSSVVARQHASSFV HQNTANGPPMLSFLGGYRTRLCTFFKRQSQVSMILLVAFVLIFLMQVSIVVLLNRPQLQQVVMTSSPPGEEFGRDWGSEQSSSEAAWVERRIYLLKEEML MAETRLERLRQEHGWLKQQIKDLETSTTTTTISASKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	0	1
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	1.0	0.8991
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	1.7	0.8785
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	2.8	0.8885
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	4.9	0.8449
AT1G07120			unknown protein		Lus10031293 [exp]	9.5	0.8428
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	10.2	0.8701
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	10.5	0.8400
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	11.4	0.8337
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	13.9	0.7910
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	15.1	0.8571

Compare expression of checked genes

Lus10042913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.