Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44810 463 / 3e-163 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 327 / 2e-107 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 281 / 3e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 268 / 2e-85 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 266 / 1e-83 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 259 / 7e-81 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 222 / 2e-67 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 216 / 6e-65 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 180 / 5e-52 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 178 / 4e-51 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041165 [exp] 393 / 7e-135 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 333 / 1e-109 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 329 / 3e-108 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 307 / 2e-99 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10028210 [exp] 251 / 5e-83 AT2G44810 172 / 1e-53 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 251 / 5e-79 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 244 / 1e-76 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 248 / 2e-76 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 228 / 8e-69 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047700 [exp] 511 / 1e-180 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 451 / 3e-157 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 418 / 3e-144 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 336 / 7e-111 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 335 / 1e-110 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 258 / 6e-81 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G263200 [exp] 258 / 9e-81 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 258 / 1e-80 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 253 / 7e-79 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 238 / 6e-74 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10042914 pacid=23181713 polypeptide=Lus10042914 locus=Lus10042914.g ID=Lus10042914.BGIv1.0 annot-version=v1.0 ATGACACACCTTTCCTACTCCTCCTCCCTCTTCTCAAACCACAACCACCACTATCCCCATCTCTTCCAACCACCATTTCGTCCCAAGTTTCGGCTCCAGG TGGCACTTCACCCTTACAGTACTGCTACTACAACCACCGGCGCCCCTCATAATCCTGCAGCTCCGAAACTGGGATCCAAATGGAAGGAGTACCAAGGCGT TAACAACTGGGACGGCCTCCTTGACCCGCTTCACGACACTCTACGATCCGAGATTCTAAGATACGGCCACTTCGTCGAGGCAACTTACGACTCTTTTGAC TTTGACCCTTCCTCAACTTCCTACGCCGCCTGTAAGTTCTCACGTAACTCCTTGCTTCCCAGCTGTGGCCTCCCTTCCACCGGTTACGTCGTCACCAAAA ACCTACGTTCCACCTGTGGGGTCCGCTTGCCCCGCTGGATTGACCGCCCTGGCCCATCATCTCATTGGGTCTCCAAGCGCTCCACCTGGATAGGATACGT CGCCGTCTGCCAGGACAAAGACGAGATCAAACGCCTCGGCCGCCGTGACGTCGTCATTGCCTTCCGCGGCACCGCCACGTGTCTCGAGTGGCTCGAGAAC CTACGTGTCCACCTCACTTCTTTTCCGGGAGGTGTCAACGGCGGCGGCGCGCCACCGATGGTGGAGAGTGGGTTTCTCAGTATGTACACGTCGGGGTCGG CCACGTGTCCTAGCCTGCAGAGCATGGTGAAGGCTGAGGTGGCCAAGATCGTCGAGACTTACAAGGACGATGACGAGCCGCCTTTGAGCTTCACCATCAC CGGCCATAGCCTTGGAGCTGCGCTGGCGATACTGTCAGCGCACGATATTAAATTAAATAATCCGAGTTTATTGGGCGGCGACTCCACGATGGTGACGGTT ATGTCGTTTGGTGGTCCCCGGGTCGGGAACAGAAGCTTCAGGCGCCAGCTGGAGAGAGGTGGGGTCAGGGTTTTGCGGATTGTCAACTCGGATGATGTCA TCACAAAAGTGCCTGGCTTTGTTGTGGACAACGGCGAGGTGAGGCTGCCGATTAGGCTGCCGACGTGGATAAAGAAGCGCGTGGAGGTCACGCCCTGGGT GTATGCGGAGGTCGGTAAGGAGCTGAGGCTGAGCAGCAGAGAGTCGCCGTATATGAAGAGTATGGATGTGGCCTCCTGTCATGAGCTCAGCACGTACTTA CAGTTGGTGAATGGGTTTGTGAGCTCCACGTGTCCCTTTAGAGCGACTGCAATGAGGAAAGTATTGAATAAGCATCAGAGAGAAAAACTGGGGTTTTGA
AA sequence Show only first row Show all	>Lus10042914 pacid=23181713 polypeptide=Lus10042914 locus=Lus10042914.g ID=Lus10042914.BGIv1.0 annot-version=v1.0 MTHLSYSSSLFSNHNHHYPHLFQPPFRPKFRLQVALHPYSTATTTTGAPHNPAAPKLGSKWKEYQGVNNWDGLLDPLHDTLRSEILRYGHFVEATYDSFD FDPSSTSYAACKFSRNSLLPSCGLPSTGYVVTKNLRSTCGVRLPRWIDRPGPSSHWVSKRSTWIGYVAVCQDKDEIKRLGRRDVVIAFRGTATCLEWLEN LRVHLTSFPGGVNGGGAPPMVESGFLSMYTSGSATCPSLQSMVKAEVAKIVETYKDDDEPPLSFTITGHSLGAALAILSAHDIKLNNPSLLGGDSTMVTV MSFGGPRVGNRSFRRQLERGGVRVLRIVNSDDVITKVPGFVVDNGEVRLPIRLPTWIKKRVEVTPWVYAEVGKELRLSSRESPYMKSMDVASCHELSTYL QLVNGFVSSTCPFRATAMRKVLNKHQREKLGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10042914 [exp]	0	1
					Lus10027066 [exp]	5.2	0.9564
					Lus10006918 [exp]	7.3	0.9564
					Lus10040397 [exp]	9.0	0.9564
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	10.4	0.9564
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	11.6	0.9564
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	12.7	0.9564
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	13.7	0.9564
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10029022 [exp]	14.0	0.7509
AT1G01390			UDP-Glycosyltransferase superf...		Lus10005335 [exp]	14.1	0.7476
AT1G04670			unknown protein		Lus10004041 [exp]	14.7	0.9564

Compare expression of checked genes

Lus10042914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.