Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48110 1479 / 0 EDD1 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028211 [exp] 1979 / 0 AT3G48110 1564 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049200 [exp] 1617 / 0 AT3G48110 1636 / 0.0 EMBRYO-DEFECTIVE-DEVELOPMENT 1, glycine-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF02091 [flax] [poplar] tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit CL0040 [flax] [poplar] PF02092 [flax] [poplar] tRNA_synt_2f Glycyl-tRNA synthetase beta subunit
Representative CDS sequence Show only first row Show all	>Lus10042915 pacid=23182037 polypeptide=Lus10042915 locus=Lus10042915.g ID=Lus10042915.BGIv1.0 annot-version=v1.0 ATGCAATGCAGCAACACGGAGGTTGGAGCTGGGACTATGAATCCTCTCACTTTCCTGAGGGTCCTCGGTCCAGAGCCATGGAATGTGGCGTATGTAGAGC CTAGTATTCGGCCTGATGATAGTCGCTATGGAGAAAATCCTAATAGGCTTCAGCGCCATACTCAATTTCAGGTTATTTTGAAGCCTGATCCTGGAAATTC ACAAGACCTTTTCATTCGCAGTCTGTCAGCTTTAGGCATCAATGTTAATGACCATGATATACGGTTTGTGGAGGACAACTGGGAAAGCCCTGTACTTGGT GCTTGGGGTTTAGGCTGGGAAATATGGATGGATGGGATGGAAATAACTCAATTCACGTATTTTCAGCAGGCTGGAAGTCTTCAGTTGTCACCAATATCTG TTGAAATCACTTACGGCCTTGAGCGCATACTCATGTTGCTTCAGGGAGTTGATCATTTCAAAAAGATACAGTATGCTGATGGTATTACCTATGGCGAGTT GTTCTCCGAAAATGAGAAGGAAATGAGTGCATATTATCTGGAACATGCTAGTGTTCAGCAGCTTCAGAATCACTTTGATTTATTTGAGGCAGAAGCACGT TCTTTGCTTGCTTTGGGTTTGGCCATTCCTGCGTATGATCAGCTTCTCAAGACATCTCACGCTTTCAATATTTTGGACTCTAGAGGATTTGTCGGTGTGA CTGAGCGTGCTCGTTATTTTGGTCGGATGCGTAGTTTAGCTCGTCAGTGTGCTGAACTTTGGTTGAAGGCCAGGGAGTCGCTGGGATACCCATTGGGTAT CGTATCTGAACCTGCTGATTCTACATGTTCTCAACAGTTTGTGGAGGTGGAAGACAACAACATGATTCTCAATGACAAAAGGGCATTTGTTCTTGAAATT GGCACTGAAGAGTTGCCTCCACTTGATGTAGTTCATGGCACCGAGCAGCTTGAAAGTTTAATGTTTAAATTACTAGAGAAACAAAGATTAGGCCATGGCA AGATTCAAGTGTTTGGCACCCCTCGCAGATTGGTGGTCTTGGTGGAGAACCTTTGCTCTAAGCAGTCAGAAAGTGAGGTCGAGGTTAGAGGTCCTCCAGT TTCAAAGGCATTTGATGAGCAGGGAAATCCTACAAAGGCTGCCGAGGGCTTTTGTCGTAGATACGATGTATCGCTGGACTCTTTGTTTAGAAAGATTGAT GGGAAAACTGAGTACATTCATGCCCTTGTAAAGAAGACTACTCGGAGGGCATCAGAGGTTATCTTGAGTGAAGATTTACCTGGTATAATCAGTAAATTAT CATTCCCAAAGTCCATGCGTTGGAACTCTCAGGTCATGTTCAGCAGGCCAATTCGCTGGGTTATGGCCTTGCATGGACCCACTGTTGTTCCATTCACATT TGTGGGAGTTTCAAGTGGAAACCTATCGTATGGTCTTCGCAACTACCCTTCATCTACAATTCAGGTCAAGAGTGCCGAATCCTATGCAAGTGCATTGATA ACGGCTGGAATTAATATTGTTATCGAGGATCGAAAGAAAAGCATCTTGGAGCAGTCAAATTTGTTGGCAGAAAGTGTCAATGGTCGTCTCTTGGTGCAGG AAAACTTGCTTCATGAGGTAGTTAATCTTGTCGAGGCACCAGTACCCGTGCTTGGAAAGTTTAAAGAGTCATTTTTGGAGCTTCCAGATGATCTCTTAAC AATGGTCATGCAGAAGCACCAGAAGTATTTCGCAATCACTGATGATGGTGGAAAGCTACTTCCTTACTTCATTGCCGTAGCAAATGGGCCCATAAACGAG ATGGTGGTTAGAGAAGGGAATGAAGCTGTGCTTAGAGCACGCTATGAAGATGCTAAATTTTTCTATGAGATGGATACTCGAAGGAGTTTCTCGGAGTTTC AAAGTCAGTTGAAAGGGATACTTTTCCATGAGAAGCTCGGGACAATGTTTGACAAGGTAGTTCGCATGCAAAAAACGGTTGGAAATTTGAGTTTGGAGTT GGGTAATGGTGAAGTCATGTTTCAAACTGTCAAGGATGCCACGTCACTAGCAATGTCGGATCTTGCTACTGCAGTAGTAACAGAATTCACTGCGCTTTCT GGAATAATGGCACGCCATTATGCCCTAAGAGATGGATATTCGGAGCAGATTGCGGAGGCATTGTTCGAAATCACCCTTCCAAGATTTTCTGGCGACGTTC TTCCAAAAAGTGACGTGGGGATTGTTTTGGCAATTGCTGACAGATTAGACAGCCTTGTTGGTTTGTTTGCTGCCGGATGCCGGCCTAGTTCTACTAATGA CCCATTTGGACTGAGAAGAATCTCATATGGCCTGGTTCAGATATTGGTGGAAAGGGAGAAAGATTTGGATTTGCATCGCGCTATAACACTTGCTGCAGCT GTACAACCTATACCTGTTGATGCTCATATAATAGATGACGCACATGCATTTGTTACTCGAAGATTAGAGCAATTCTTGGTCGACAAAGGAATAAGTTCAG AATTGGTCCGTTCTGCCCTGGCTGAGCGTGGGAATTCCCCATATCTGGCAGCTAAAACAGCATCCAAAGTGCTGATAGATACTCTACAGATGCAAATGTT ATCAGAAAGTCATCTATTCCCTAAGGTGGTTGAAGCATACTCTCGACCCACTAGAATAGTTCGAGGAAAGGACTTTGATTCCAGCTACCAGAAATTCAAC TTGGGTATTGACAAATTCCCTTCGTTCTGCAAGGTGAATGACACAAAATTCGAGACAAATGAAGAGAGAGCCTTGTGGAAGACTTTCTTGTCCACTAGAA GCAAAATTCACCCTGGTATCGAGGTTGACGAATTCGTTGAAGTTTCTTCGGAGCTGGTGCAGCCTTTGGAGGATTTCTTCAATAATGTCTTCGTTATGGT GGAAGACGAAAGCGTTCGAAACAACAGGCTTGCCCTACTTGCGCAAATTGCGGATCTTCCCAGAGGCATTGCGGACCTGTCACTCTTGCCAGGGTTTTAG
AA sequence Show only first row Show all	>Lus10042915 pacid=23182037 polypeptide=Lus10042915 locus=Lus10042915.g ID=Lus10042915.BGIv1.0 annot-version=v1.0 MQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGINVNDHDIRFVEDNWESPVLG AWGLGWEIWMDGMEITQFTYFQQAGSLQLSPISVEITYGLERILMLLQGVDHFKKIQYADGITYGELFSENEKEMSAYYLEHASVQQLQNHFDLFEAEAR SLLALGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAELWLKARESLGYPLGIVSEPADSTCSQQFVEVEDNNMILNDKRAFVLEI GTEELPPLDVVHGTEQLESLMFKLLEKQRLGHGKIQVFGTPRRLVVLVENLCSKQSESEVEVRGPPVSKAFDEQGNPTKAAEGFCRRYDVSLDSLFRKID GKTEYIHALVKKTTRRASEVILSEDLPGIISKLSFPKSMRWNSQVMFSRPIRWVMALHGPTVVPFTFVGVSSGNLSYGLRNYPSSTIQVKSAESYASALI TAGINIVIEDRKKSILEQSNLLAESVNGRLLVQENLLHEVVNLVEAPVPVLGKFKESFLELPDDLLTMVMQKHQKYFAITDDGGKLLPYFIAVANGPINE MVVREGNEAVLRARYEDAKFFYEMDTRRSFSEFQSQLKGILFHEKLGTMFDKVVRMQKTVGNLSLELGNGEVMFQTVKDATSLAMSDLATAVVTEFTALS GIMARHYALRDGYSEQIAEALFEITLPRFSGDVLPKSDVGIVLAIADRLDSLVGLFAAGCRPSSTNDPFGLRRISYGLVQILVEREKDLDLHRAITLAAA VQPIPVDAHIIDDAHAFVTRRLEQFLVDKGISSELVRSALAERGNSPYLAAKTASKVLIDTLQMQMLSESHLFPKVVEAYSRPTRIVRGKDFDSSYQKFN LGIDKFPSFCKVNDTKFETNEERALWKTFLSTRSKIHPGIEVDEFVEVSSELVQPLEDFFNNVFVMVEDESVRNNRLALLAQIADLPRGIADLSLLPGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	0	1
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	1.4	0.9517
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	2.0	0.9374
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10028211 [exp]	2.6	0.9275
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	4.2	0.9394
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	4.9	0.9432
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	6.9	0.9211
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	8.1	0.8668
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	9.2	0.9280
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	9.4	0.9067
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10022861 [exp]	11.8	0.8887

Compare expression of checked genes

Lus10042915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.