Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09890 338 / 6e-110 Rhamnogalacturonate lyase family protein (.1) AT1G09880 312 / 7e-100 Rhamnogalacturonate lyase family protein (.1) AT1G09910 311 / 6e-99 Rhamnogalacturonate lyase family protein (.1) AT4G24430 304 / 1e-96 Rhamnogalacturonate lyase family protein (.1) AT2G22620 265 / 4e-82 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 266 / 5e-82 Rhamnogalacturonate lyase family protein (.1) AT4G37950 248 / 1e-74 Rhamnogalacturonate lyase family protein (.1) AT1G65210 139 / 6e-38 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028212 [exp] 452 / 5e-154 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 398 / 7e-133 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 333 / 2e-107 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 299 / 7e-96 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005978 [exp] 269 / 4e-83 AT4G24430 630 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 269 / 2e-82 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 264 / 3e-81 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030232 [exp] 262 / 4e-79 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10004281 [exp] 249 / 2e-75 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G151500 [exp] 438 / 1e-147 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 346 / 9e-113 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 345 / 2e-112 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 339 / 4e-110 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 299 / 4e-94 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 265 / 3e-81 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 260 / 2e-79 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 235 / 4e-70 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10042916 pacid=23181946 polypeptide=Lus10042916 locus=Lus10042916.g ID=Lus10042916.BGIv1.0 annot-version=v1.0 ATGATGGATAATGGGATTGAACAAGTGACGATGTCGAATCCTCAAGGAATAGTGACTAGGATTCGTTTCAGTGGACTTGACAATCTGCTCGAAGTCCTGA ATGAGGAAACCAATCGAGGGTACTGGGACCTCGTATGGAGCTCACCAGGGACTGCAGGAATCTTTGACGTGATAAAAGGGACGAGTTTTGAGGCGATAAC AGAAACAGAAGAACAAGTGGAGGTTTCATTACATTCGAAAAAATCTTTTCGACGGACACTACATAATGTGTTGACGACTGACAGGTTTCATTACATGGGT GCATCGGGAAATAGACAGAGATACATGCCCCTTCCGGATGACAGAATCCCTCCTAGAGGTCAACCATTGGCTTACCCTGAAGCAGTGTTGATGGTCAACC CTGTGGAGGCTGACTTAAAGGGTGAGGTGGACGACAAGTACCAATACTCTTGTGACAACAAGGACAATAAGGTCCATGGTTGGATGTGTATGGACCCACC TATTGGCTTTTGGCAAATTACTCCTACCGACGAGTTTCGATCCGGCGGCCCTCTCAAACAGAACATTCTAGCCTTACATGATAGAGTGGTCTCCATTTCG AATCTCGGTAGCCTTGAATTTGTGCACTCCTCAACTAATCTAATGAGAGCTCTCTTCCGTTTTAAGGACGTTGGAGCCTATGTTGGATTGGCGCCTCCTG GAGATGTTGGATCTTGGCAAAGAGAATGCAAGAACTATCAATTCTGGACTAAAACAGACGAGGATGGCTTCTTCTCCATTAACCATATCATCACTGGTGA CTACAATCTCCACGCTTGGGTTCCGGGTTTTGTTGGAGACTACAAGAATCCCAACCTTGTTTCCATCACCTCAGGTTGCTACGTTGACATGGGAGATATG GTTTTCGAGCCTCCGCGAAGTGGTCCTACGCTATGGGAAATTGGCATTCCTGATCGATCTGCCTCGGAATTCTATGTTCCTGATCCTAATCCCAAGTACA TCAATAAGCTCTTTGTCAATCATCCTGAAAAGTTCAGGCAATATGGTTTATGGGAGAGATACGAAGAATTATACCCAAATGAGGACTTGGTCTATAATGT TGGAACTAGTGATTACACTAAAGACTGGAAGAGAGAAAACAACACATATCAAGGAACCACTTGGAGTATCAAGTTCGATCTCGACAATGTTGAGAAGAAC GGAATCTACAAGCTACGAGTCGCGATTGCCTCTGCAACCTTTTCAGAACTGCAGGAGGGGGGGACCAAGCTTGTTGCAGGGACTAACACCATATATTTGA CTCAGTCCAGAGCTACTGGTCCTTTCCAAGGGATTATGCATGACTACATTCGTCTGGAAGCCCCTTCTCCAACTTCATTCGTCGACAGTTTCAGTAAAGC CATCAACATTTGA
AA sequence Show only first row Show all	>Lus10042916 pacid=23181946 polypeptide=Lus10042916 locus=Lus10042916.g ID=Lus10042916.BGIv1.0 annot-version=v1.0 MMDNGIEQVTMSNPQGIVTRIRFSGLDNLLEVLNEETNRGYWDLVWSSPGTAGIFDVIKGTSFEAITETEEQVEVSLHSKKSFRRTLHNVLTTDRFHYMG ASGNRQRYMPLPDDRIPPRGQPLAYPEAVLMVNPVEADLKGEVDDKYQYSCDNKDNKVHGWMCMDPPIGFWQITPTDEFRSGGPLKQNILALHDRVVSIS NLGSLEFVHSSTNLMRALFRFKDVGAYVGLAPPGDVGSWQRECKNYQFWTKTDEDGFFSINHIITGDYNLHAWVPGFVGDYKNPNLVSITSGCYVDMGDM VFEPPRSGPTLWEIGIPDRSASEFYVPDPNPKYINKLFVNHPEKFRQYGLWERYEELYPNEDLVYNVGTSDYTKDWKRENNTYQGTTWSIKFDLDNVEKN GIYKLRVAIASATFSELQEGGTKLVAGTNTIYLTQSRATGPFQGIMHDYIRLEAPSPTSFVDSFSKAINI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	0	1
AT4G24110			unknown protein		Lus10017328 [exp]	4.6	0.8571
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	6.9	0.8769
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	8.1	0.8506
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	9.5	0.8491
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	9.8	0.8558
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	9.9	0.8258
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	13.0	0.8159
					Lus10006091 [exp]	13.4	0.8605
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	16.9	0.8088
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	19.6	0.8243

Compare expression of checked genes

Lus10042916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.