Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09920 244 / 5e-83 TRAF-type zinc finger-related (.1) AT4G15420 70 / 7e-14 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028213 [exp] 366 / 6e-131 AT1G09920 256 / 2e-87 TRAF-type zinc finger-related (.1) Lus10031538 [exp] 63 / 2e-11 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 63 / 2e-11 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109800 [exp] 308 / 3e-108 AT1G09920 273 / 1e-94 TRAF-type zinc finger-related (.1) Potri.014G156300 [exp] 65 / 3e-12 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042917 pacid=23182058 polypeptide=Lus10042917 locus=Lus10042917.g ID=Lus10042917.BGIv1.0 annot-version=v1.0 ATGGCAATGGCATCTGAGGAGTCTACCAGCATTTGTATCCACTGTGATCGAGCTATCCCTTCTTCAAATCTTGATCTGCATATGGTACACTGCGCCAGGA ATCTCGAAAAATGCAAACTTTGTGGAGATATGGTACCAAAACGCCATTCTGAAGAACATTACTTGAACACTCATGCTCCGGTATCTTGTTCACTCTGCAG TGAGACAATGGAACCGGACATGTTAGGTGTACATAAAGGTGAAAACTGCCCCCAAAGAATTGTCACATGTGAGTTCTGTGAATTCCCGTTGCCTGCAATT GATTTGGCTGAGCATCAGGAGGTTTGTGGGAACCGGACAGAACTGTGCCACTTGTGTGGTAGATATGTAAGACTCAGAGAGAGGATCAACCATGAGAGTA GATGCACTGGTGTTCCAGATGATACTGTTGGCTCTTCCAGGGATACAAACCGATATGCGGCCACGGAAAGAGCTCGAGGAGCTGGAGCAGGAGGAGGTCG TCCAAGACAGGAGTACTCGCTGAAACGAATGTTGTTAACTGTGGCAATAACAGGCATTGCTGTTGTGTTGGGATCATTTGTTTTCCAGAAAAGAAGAGAA GGGGATCAAGTTAATTAG
AA sequence Show only first row Show all	>Lus10042917 pacid=23182058 polypeptide=Lus10042917 locus=Lus10042917.g ID=Lus10042917.BGIv1.0 annot-version=v1.0 MAMASEESTSICIHCDRAIPSSNLDLHMVHCARNLEKCKLCGDMVPKRHSEEHYLNTHAPVSCSLCSETMEPDMLGVHKGENCPQRIVTCEFCEFPLPAI DLAEHQEVCGNRTELCHLCGRYVRLRERINHESRCTGVPDDTVGSSRDTNRYAATERARGAGAGGGRPRQEYSLKRMLLTVAITGIAVVLGSFVFQKRRE GDQVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	2.0	0.8711
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	2.2	0.8735
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	2.8	0.8550
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014895 [exp]	8.7	0.8561
AT5G08450			unknown protein		Lus10004298 [exp]	9.3	0.7827
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	20.8	0.8201
AT1G17970			RING/U-box superfamily protein...		Lus10034644 [exp]	23.3	0.8442
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	25.8	0.8030
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	30.3	0.8438
					Lus10019815 [exp]	32.5	0.7810

Compare expression of checked genes

Lus10042917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.