Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57230 162 / 4e-51 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 135 / 1e-40 MADS AGL21 AGAMOUS-like 21 (.1) AT2G22630 133 / 1e-39 MADS AGL17 AGAMOUS-like 17 (.1) AT2G14210 101 / 3e-27 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT1G26310 59 / 4e-11 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT2G03710 57 / 2e-10 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 55 / 1e-09 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G69120 55 / 1e-09 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT4G18960 54 / 4e-09 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G61120 54 / 4e-09 MADS AGL13 AGAMOUS-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028215 [exp] 153 / 6e-49 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10029557 [exp] 113 / 6e-33 AT3G57230 106 / 3e-29 AGAMOUS-like 16 (.1.2) Lus10007100 [exp] 101 / 3e-27 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10020477 [exp] 62 / 6e-13 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10034662 [exp] 59 / 3e-11 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 57 / 9e-11 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005302 [exp] 58 / 1e-10 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 58 / 2e-10 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 57 / 3e-10 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G150501 [exp] 215 / 2e-71 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 187 / 6e-61 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 147 / 3e-45 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 145 / 2e-44 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 145 / 2e-44 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.010G154100 [exp] 61 / 8e-12 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.012G062300 [exp] 61 / 8e-12 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098500 [exp] 56 / 4e-10 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 54 / 3e-09 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G112400 [exp] 54 / 3e-09 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10042919 pacid=23181844 polypeptide=Lus10042919 locus=Lus10042919.g ID=Lus10042919.BGIv1.0 annot-version=v1.0 ATGTTGAGGCAGCAACTGCAGAACTTGCAAGAAAATCATAGGCAAATGATGGGTGAGGAGCTTTCTGGTTTAAATATAAAGGATTTGCAGAACTTAGAAA ACCAATTGGAGATGAGTCTTAGAGGAGTTCGGATGCGAAAGGACCAAATTTTAATGGACGAAATACAAGAATTAAACACAAAGGGTAACCTCATCCACCA GGAAAACATGGAGCTCTATAAGAAGGTAAATGTACTACGAAAAGAAAACACGGAACTATACAAAAAGGTTTATGGAACGCGGGATGCAAATGGAGCCAAC AGAAACAATCTTCTCATCAATGGTCTGAGCATCCATGAGGATTCACGTGAACCTATACATCTCCAGCTTAGTCAGCCACAAGAAGAAAACCACGATGATA CACCACCAACGCAAGGAACCACAAACCTAGGGTACAATTAA
AA sequence Show only first row Show all	>Lus10042919 pacid=23181844 polypeptide=Lus10042919 locus=Lus10042919.g ID=Lus10042919.BGIv1.0 annot-version=v1.0 MLRQQLQNLQENHRQMMGEELSGLNIKDLQNLENQLEMSLRGVRMRKDQILMDEIQELNTKGNLIHQENMELYKKVNVLRKENTELYKKVYGTRDANGAN RNNLLINGLSIHEDSREPIHLQLSQPQEENHDDTPPTQGTTNLGYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10028215 [exp]	2.4	0.9334
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	5.0	0.9267
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	5.1	0.9394
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	7.3	0.9297
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	9.5	0.9211
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	11.5	0.8975
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	12.1	0.9239
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	12.2	0.9288
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	12.6	0.9199
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	13.9	0.9255

Compare expression of checked genes

Lus10042919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.