Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08170 582 / 0 ATAIH, EMB1873 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028216 [exp] 767 / 0 AT5G08170 584 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055300 [exp] 630 / 0 AT5G08170 594 / 0.0 EMBRYO DEFECTIVE 1873, AGMATINE IMINOHYDROLASE, porphyromonas-type peptidyl-arginine deiminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0197 [flax] [poplar] GME PF04371 [flax] [poplar] PAD_porph Porphyromonas-type peptidyl-arginine deiminase
Representative CDS sequence Show only first row Show all	>Lus10042920 pacid=23181948 polypeptide=Lus10042920 locus=Lus10042920.g ID=Lus10042920.BGIv1.0 annot-version=v1.0 ATGGTCGACTTGAAAGGATCACCGGATCTCCATGGATATAAGATGCCTGCCGAGTGGGAGCCTCATTCTCAAACTTGGATGGGTTGGCCTGAGAGGCCAG ATAACTGGCGAGATTCTGCTTTGCATGGTCAACGAGTTTTCACCAAGGTGGCAACCGCTATTTCAAAGTTTGAACCAGTGACTGTTTGTGCAAGTGCTGC ACAGTGGGAGAATGCTAGGACTCAGCTCCCAGCACACATTCGAGTCGTTGAGATGAGCATGAATGACAGCTGGTTCCGTGATAGTGGTCCAACATTTGTC ATAAGGAAGAGCATTTCGGGTTCCAACATTTCGGAGCAAGAGATTGCAGGCATCGACTGGAACTTCAATAGTTGGGGAGGAGTTGACGAGGGTTGTTACC AAGATTGGAGCCTGGACACTTCTGTAGCATCAAAGATTCTTGAAATTGAGAGGTGCCCGAAGTTTCGCCATACTATGATTCTTGAAGGTGGAAGCATCCA TGTCGACGGAGAAGGAACATGCCTTACCACTGAGGAATGCCTGTTGAACAAGAACAGGAATCCTCATCTTACAAAGGAACAAATAGAAGATGAACTGAAG AAGTATTTAGGAGTTCGTAAAATTATTTGGTTACCTCGGGGATTATATGGGGATGATGATACAAATGGTCATATTGACAATATGTGCTGCTTTGCAAGAC CTGGGGTGGTTTTGTTGTCTTGGACGGATGATGAAAAAGATCCTCATTATGAAAGAGCAGTAGAAGCCTTTTCTGCTCTGTCTAGTGCAACTGATGCTAA TGGCAGGAAGCTAGAGATTCTCAAGCTGCATGTACCAGGACCACTTTACATGACAGAAGAAGAAGGAAATGGGTTTGCTCAAGACAGTGATGGTAAATCA AGAGTTTCAGGCACAAGACTTGCTGCTTCTTATGTGAACTTCTATTTCGCGAATGGAGGGATAATCGTTCCGCAATTTGGTGACAAAAAATGGGACGACG AAGCAATTCGTGTCCTCTCGCTTGCTTTCCCAAATCATGAAGTTGTTGGAATCGACGGCGCAAGGGAGATAGTTATGGGTGGTGGAAACATACATTGCAT CACCCAGCAACAACCAGTAAGTTTTCCTGGTGGTTTATCGCAAAAGCTTAAGTAA
AA sequence Show only first row Show all	>Lus10042920 pacid=23181948 polypeptide=Lus10042920 locus=Lus10042920.g ID=Lus10042920.BGIv1.0 annot-version=v1.0 MVDLKGSPDLHGYKMPAEWEPHSQTWMGWPERPDNWRDSALHGQRVFTKVATAISKFEPVTVCASAAQWENARTQLPAHIRVVEMSMNDSWFRDSGPTFV IRKSISGSNISEQEIAGIDWNFNSWGGVDEGCYQDWSLDTSVASKILEIERCPKFRHTMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIEDELK KYLGVRKIIWLPRGLYGDDDTNGHIDNMCCFARPGVVLLSWTDDEKDPHYERAVEAFSALSSATDANGRKLEILKLHVPGPLYMTEEEGNGFAQDSDGKS RVSGTRLAASYVNFYFANGGIIVPQFGDKKWDDEAIRVLSLAFPNHEVVGIDGAREIVMGGGNIHCITQQQPVSFPGGLSQKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Lus10042920 [exp]	0	1
AT1G11655			unknown protein		Lus10001141 [exp]	6.9	0.8903
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	8.5	0.9002
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	8.7	0.8985
AT1G52155			unknown protein		Lus10025835 [exp]	12.6	0.8235
AT4G27870			Vacuolar iron transporter (VIT...		Lus10022771 [exp]	13.5	0.8939
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10026643 [exp]	18.2	0.8768
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	19.1	0.8818
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10028215 [exp]	22.4	0.8795
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	22.6	0.8673
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	23.6	0.8813

Compare expression of checked genes

Lus10042920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.