Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 86 / 3e-20 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 82 / 5e-19 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT2G25160 78 / 2e-17 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G31950 74 / 3e-16 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT5G10600 62 / 6e-12 CYP81K2 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) AT2G23190 61 / 2e-11 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT3G48280 59 / 6e-11 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G10610 59 / 6e-11 CYP81K1 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) AT3G48310 59 / 6e-11 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48270 59 / 1e-10 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010758 [exp] 158 / 3e-47 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10035635 [exp] 159 / 8e-47 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 142 / 6e-40 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 139 / 2e-39 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 96 / 1e-23 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 93 / 1e-22 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 84 / 2e-19 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 83 / 4e-19 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 81 / 2e-18 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037600 [exp] 134 / 1e-37 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 132 / 3e-37 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 132 / 5e-37 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 132 / 8e-37 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 126 / 7e-35 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 121 / 7e-33 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 121 / 7e-33 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 103 / 2e-26 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108766 [exp] 96 / 3e-26 AT4G31970 91 / 2e-22 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 99 / 4e-25 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042922 pacid=23181810 polypeptide=Lus10042922 locus=Lus10042922.g ID=Lus10042922.BGIv1.0 annot-version=v1.0 ATGGATTTCATGACTTTACTACCGTCATTCTCGATCCTCGTAGTAGCCTCCCATATTTTCCTCTTCCGATTATCGAGCTCAGCCGTCGGCAACAACAAAA ACAAAGCACCACACCAGGCCGGCGGCGCATGGCCCATCATCGGACACCTCCATCTCTTAGGCGGACAGCGGCCAGCGCACATAGTATTGGGCCATATGGC AGACAAATACAGCCCATTATTCACCATCCGACTGGGCGTCCACCCGGCTATGATAGTCAGCAGTTGGGAAATGGCCAAGGAGTGCTTGACCATACACGAC CGTGTGTTAGCGGATAGACCTAAGACCATAGCCATGGATATAACGGTTACCAAAGATCCATCTTCGCGTTCAGCCCATACGACCCCTACTGGTGAGAAAT CCGGAAGATTGCCACGCTGGAACTCCTTTCCTCTCACCGCCTAA
AA sequence Show only first row Show all	>Lus10042922 pacid=23181810 polypeptide=Lus10042922 locus=Lus10042922.g ID=Lus10042922.BGIv1.0 annot-version=v1.0 MDFMTLLPSFSILVVASHIFLFRLSSSAVGNNKNKAPHQAGGAWPIIGHLHLLGGQRPAHIVLGHMADKYSPLFTIRLGVHPAMIVSSWEMAKECLTIHD RVLADRPKTIAMDITVTKDPSSRSAHTTPTGEKSGRLPRWNSFPLTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10042922 [exp]	0	1
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	1.4	0.8341
AT3G57200			unknown protein		Lus10018036 [exp]	2.4	0.7828
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10028230 [exp]	2.8	0.7773
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	8.4	0.7670
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	9.3	0.8179
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10005803 [exp]	9.8	0.7384
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	10.4	0.7684
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	14.5	0.7461
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	15.0	0.7733
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	16.5	0.7288

Compare expression of checked genes

Lus10042922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.