Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 369 / 5e-116 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 359 / 4e-113 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 361 / 2e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 357 / 2e-112 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 360 / 3e-112 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 347 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 347 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 342 / 3e-107 MEF22 mitochondrial editing factor 22 (.1) AT4G14850 340 / 2e-106 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13270 341 / 5e-106 RARE1 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 378 / 3e-119 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 379 / 2e-118 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 377 / 9e-118 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 368 / 6e-116 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 364 / 3e-114 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 365 / 7e-114 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 368 / 3e-113 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 361 / 5e-113 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 362 / 9e-113 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G151200 [exp] 801 / 0 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 801 / 0 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 402 / 3e-127 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 384 / 1e-121 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 381 / 5e-120 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 377 / 3e-119 AT3G22690 582 / 0.0 unknown protein Potri.001G466066 [exp] 373 / 2e-117 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 370 / 4e-117 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 370 / 1e-116 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 371 / 4e-116 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042924 pacid=23181962 polypeptide=Lus10042924 locus=Lus10042924.g ID=Lus10042924.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTATCTTCGCTTTCTTCAACCAGTAACTTCCTCGTTGAACCTCATCTACACAAACTCCCCTCTTCTGCTCATCTCCCCCTAGAAAAGTTGG TTGGAGCTTCCGAGCAGAAACTATCTTACACCCTCAAGGAAGCGCTTTCTTCCATACGAAAAGGTGCCAAGTTTGAGCCCGAGTTTTATCCTCCTCTCTT GCAGCATTGCCTTGATGTGAAATCGGCCTCGCAAGCGAAAATCCTTCATGGCCACATGATCAAGACTAGAAACCACGAGGAAACCTTCTTGGCGATGAGC CTCCTCGGCGTTTATGCAAAATGCGGCGATATAGAAAGTGCTCGCCAAGTGTTTGACGATTTGCCTACAAAGAGTGTTACTGCCTGGAGTGTACTGATGA AGACTTACGTCCAGAGCTCGATGCCGGAGGTAGCCGTTGAAGTTTTCCAAGAGCTATTGGAAAGCGGGTCACTTCCTTCAACCTTCAATTTGACCATCGC TCTGAATGCTTGTTATTCCTTGAACTCGTTGGATTTAGGCACCCAGTTTCATGCATTCATTATCAAGTATAGGATGGAACACGACACTAGTGTTGGAAAC GCGCTCTGTACTTTCTACTCCAGATCTGGCAAGTTGCATTCTGCCATTAAGGCCTTCCGGAGGATCGAATACAAAGATGTCATCTCGTGGAGTTCGGTTA TTACCTCCTGTGATAACAATGGTGATGCGGAAAGTGGGTTGAGATTTTTCGTTGAAATGCGCGAGGAAGATGTCGAACCTAATGAATTCACATTCACTGC TGTGTTGAGCCTGTGCAGTGTCCTGCTGGATTTGGACTTAGGGTCTCAGGTTCATTCCCTGATTGTCAAGCTTGGCCTTTTGTCCAATCTGAATATAGTT CTTTTGATTATGAATCTCTACAGGAAATCCGGATGGATCGACGAGGCACAAACTCTTTTCAACACATTGGAATCTGTGAGCTTGGTTACTTGGAGTGCAG TCATCGCAGGCTATGCAGAAACAGTTAATGTGGCAAAGGATGAACTTATAGCTCATAGGTGCGGAACCGAGGCGTTGAGAAACTACTTGAATCTGTGTCG TTTGGGTTTGAAGCCTAACGAATACACCTTGTCGAGCATCTTTACCGTATGTGGTAAGCTTCTGGCATCGGAACAAGGTGAACAAATTCATGCTCAGACT ATTAAGTCCGGTTATTTGTCGAATGTGATTGTGGGAACTGCAGTGGTGAATATGTATAACAAATGTGGAACCATTGAGGAAGCAAGTAAAGCCTTCCTGG AGATGTCTTCCAGGACTGTGGTATCTTGGACAACCATGATTTCAAGCTTTGCACAACTCGGCCGGTCTCAACAAGCCCTGCAACTCTTCGAAGACATGAG GCTAGCTGGATCTAAACCGAACTATATCACGTTTATGGGTGCCCTCGCTGCTTGCAGCCATACTGGGATGGTTGACGAGGCATTGAGCTATTTTCAGATG ATGCGAAAACAATACAGAATCAAGCCTGCAATGGGCCACTACGGATATATGGTCGATTTGTATGTGCGATTAGGTAAGCTCGACTTGGCTTATAAAGTCA TCAAGAAGATGGAGTTCCCGCCGAATCAGTTCATCCGACTGCTATTGATTTCTGGATGTAAGAATCAGTTGAATGAAGAAATGGGATTTCATATTGGTGA GCAATTGCTGAAACTGAAACCAGACGATTTCCTCGTTAAATCTGTCTTGTTAAATATGTATAGAGCTGCTGAGCGCTGGGAAGACGTTTCAAGACTCGAA GAAGAAGCGACGAAAGAGGAGAAAATAGAAAGAAGGGTGGAAGATTGGAGCTGGATTAGCATTAAAGATAAGGTTCGGTCTTTCAAGACAGGCGTTCAAT TGGCCCCTGAAGATAAAGAGACTTCAAGGTTGTTGGAAGAACTGCTAGTGAAAGCAAAGAGCCATGGGTACGAGTCACAACAAGCTTTGAAGGGGAATGA TGAAGAAAACAGAGACTCTTGTGGTCATCACAGTGAAAAGTTGGCTGTGACATTTGGGTTGCTGAGTACCCAAACTGGTTCGGCCATACGCGTCAGCAAG ACTACAACAATGTGTAGAGACTGCCATGACTTCATAAAGATGGTCTCACTTATGAGTAGTAGGGAAATTATCGTGAAAGATAGGTGGCTCATTCACAGAT TTGTTGATGGACAGTGCTCTTGTGCTGAGTTCCCTGGCCTCCTATGA
AA sequence Show only first row Show all	>Lus10042924 pacid=23181962 polypeptide=Lus10042924 locus=Lus10042924.g ID=Lus10042924.BGIv1.0 annot-version=v1.0 MASLSSLSSTSNFLVEPHLHKLPSSAHLPLEKLVGASEQKLSYTLKEALSSIRKGAKFEPEFYPPLLQHCLDVKSASQAKILHGHMIKTRNHEETFLAMS LLGVYAKCGDIESARQVFDDLPTKSVTAWSVLMKTYVQSSMPEVAVEVFQELLESGSLPSTFNLTIALNACYSLNSLDLGTQFHAFIIKYRMEHDTSVGN ALCTFYSRSGKLHSAIKAFRRIEYKDVISWSSVITSCDNNGDAESGLRFFVEMREEDVEPNEFTFTAVLSLCSVLLDLDLGSQVHSLIVKLGLLSNLNIV LLIMNLYRKSGWIDEAQTLFNTLESVSLVTWSAVIAGYAETVNVAKDELIAHRCGTEALRNYLNLCRLGLKPNEYTLSSIFTVCGKLLASEQGEQIHAQT IKSGYLSNVIVGTAVVNMYNKCGTIEEASKAFLEMSSRTVVSWTTMISSFAQLGRSQQALQLFEDMRLAGSKPNYITFMGALAACSHTGMVDEALSYFQM MRKQYRIKPAMGHYGYMVDLYVRLGKLDLAYKVIKKMEFPPNQFIRLLLISGCKNQLNEEMGFHIGEQLLKLKPDDFLVKSVLLNMYRAAERWEDVSRLE EEATKEEKIERRVEDWSWISIKDKVRSFKTGVQLAPEDKETSRLLEELLVKAKSHGYESQQALKGNDEENRDSCGHHSEKLAVTFGLLSTQTGSAIRVSK TTTMCRDCHDFIKMVSLMSSREIIVKDRWLIHRFVDGQCSCAEFPGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	0	1
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	1.7	0.9606
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	2.8	0.9600
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	3.0	0.9473
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	3.2	0.9440
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	4.9	0.9458
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	4.9	0.9432
AT5G01590			unknown protein		Lus10012500 [exp]	5.3	0.9430
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	6.1	0.9100
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	6.6	0.9382
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	7.3	0.9293

Compare expression of checked genes

Lus10042924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.