Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09620 184 / 3e-52 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 175 / 7e-49 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 133 / 3e-33 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 110 / 2e-25 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G18230 107 / 9e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 107 / 1e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 98 / 1e-23 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT5G49920 99 / 6e-23 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 99 / 1e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035641 [exp] 183 / 4e-55 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 139 / 4e-36 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010753 [exp] 124 / 9e-34 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 126 / 2e-31 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 118 / 1e-29 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 114 / 1e-26 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 112 / 8e-26 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10007952 [exp] 110 / 2e-25 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 109 / 3e-25 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285800 [exp] 206 / 1e-60 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 203 / 9e-60 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 175 / 4e-50 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 143 / 7e-38 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 140 / 1e-36 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 122 / 2e-29 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 117 / 8e-28 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 115 / 4e-27 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 110 / 2e-25 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 108 / 6e-25 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10042925 pacid=23181820 polypeptide=Lus10042925 locus=Lus10042925.g ID=Lus10042925.BGIv1.0 annot-version=v1.0 ATGGAGAACTACTCTTACTCGTCGTATCCGGATTCGGGAGACTCGTCACCTCGATCCCGCGAGATCGACGACACTCAGTCATGGGACGAGCCTCTTTCCT CAAACTATAAAGTGAAATTCATGTGCAGCTACGGCGGCAAAATCCAACCCCGCCCCCACGACAACCAGCTTGCCTACATCGGCGGCGACACTAAGATACT CTCCTTAGACCGTAACGTCAAATTCTCCGCTGTCGTCACCAAGCTCTCCTCCCTATCCGCCGTCGGATCTGACTCCTCCGACCTCTGCGTCAAGTACCAG CTCCCTGGAGAGGATCTCGACGCCTTGATCTCTGTCACCAATGATGAGGATCTGGAGCACATGATGATGGAGTACGACCGCCTCTGTCGCGCTTCCCCCA AACCGGCCAGGCTGCGGATCTTCCTCTTTAATACCTCTCCCAGGGCCAGGAGTTTCGGATCTGGCGACACCATGAAATCGGAAGGTCAGTGGTTCGTGGA CGCTTTGAATTCCGTCCCTGTCGTCGGCGGCCACCATCTCGACGTCGTTTCTCCTCCTCCCCCGGCCGGGGTTCCTTCCGGCAATCCCGATTTTCTGTTC GGGTTGGAGAAAGGGTTTCCATCTGGTGTTCCGATGACCAAACTCGCCACTGCTGAGGCGCAGGCCCCACAACAGCAGGCTCCCCTGGAAGTTGTTGGGT CGGGCAATAAGGATTTATCGGGCGGGTCGGAGGACCCGAATCAACAGATCCAGGATGTGCAGAGATTCCAAATCAGCAATCCGGAACAGGTAACCGTCTC GAATTCCAGAGGGTTCCCTGGAGAATTCTACCTCCAGAAAGTCCAGCAGGAGAAAGTAGGAGGGGCCGAAGCCGGTCCATCCCCAATTCCGGTTCACATG CCGGTGCCGCTGTCGACCGCACGCCCGCCCGCCGGCGGTCCCTACCCCACTGGGGGAGGAAACGAGCAGCAGCAGGTCTATATAATCCCCGGTGGGGGAA TGTACCAAACTCAGGGGATGAGATCACCGGTGACGGGGCAAATGGGAGGTGGTTATTACGATGGAGTACAGAGAGTGGTGCAAGAGGTTTACAGGGAACA GCCTCCGGCATATAATGCTTCTATTCAACAGCAGCAGCAGCAGCAGGGGGGAATGGGAGTAGTTCAGCAGCAGAAAGTGGGAATGGTGGCGGAGCAGCAA TATGGGTATATGCAAGTGGGTTATGATAGTGCAGGAAGACAGGTTTATTTCACCACTACGACACCTTATCAGCAGGCCATGGAAACAACTAGGCAAGGTG CGGTAGCCGGTAATCAGGACGTTAAAGTTGTAGCTGTAGCTGCTAATGTCAAAGTCGCTCAAGCTCAAGCACAAGCACAAGCCCAAGCTCAAGCACAAGC ACAAGCGCAAGCTTCTTGA
AA sequence Show only first row Show all	>Lus10042925 pacid=23181820 polypeptide=Lus10042925 locus=Lus10042925.g ID=Lus10042925.BGIv1.0 annot-version=v1.0 MENYSYSSYPDSGDSSPRSREIDDTQSWDEPLSSNYKVKFMCSYGGKIQPRPHDNQLAYIGGDTKILSLDRNVKFSAVVTKLSSLSAVGSDSSDLCVKYQ LPGEDLDALISVTNDEDLEHMMMEYDRLCRASPKPARLRIFLFNTSPRARSFGSGDTMKSEGQWFVDALNSVPVVGGHHLDVVSPPPPAGVPSGNPDFLF GLEKGFPSGVPMTKLATAEAQAPQQQAPLEVVGSGNKDLSGGSEDPNQQIQDVQRFQISNPEQVTVSNSRGFPGEFYLQKVQQEKVGGAEAGPSPIPVHM PVPLSTARPPAGGPYPTGGGNEQQQVYIIPGGGMYQTQGMRSPVTGQMGGGYYDGVQRVVQEVYREQPPAYNASIQQQQQQQGGMGVVQQQKVGMVAEQQ YGYMQVGYDSAGRQVYFTTTTPYQQAMETTRQGAVAGNQDVKVVAVAANVKVAQAQAQAQAQAQAQAQAQAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	0	1
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	1.0	0.9582
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	1.4	0.9445
AT4G32750			unknown protein		Lus10022138 [exp]	2.8	0.9347
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	3.2	0.9341
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	3.5	0.9272
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	4.0	0.9284
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	7.9	0.9280
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	12.4	0.9194
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	12.6	0.9273
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	13.2	0.9365

Compare expression of checked genes

Lus10042925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.