Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28670 470 / 6e-163 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028219 [exp] 847 / 0 AT3G28670 479 / 1e-166 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108700 [exp] 570 / 0 AT3G28670 501 / 4e-175 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042926 pacid=23181660 polypeptide=Lus10042926 locus=Lus10042926.g ID=Lus10042926.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTCGTAGTAGGAGACGAAGTTCAACTCAAATTGGCAGAGGACCGCCTTACTCATTCTGGTTTCACCGCCCAGGTCGGCTTGGTGATTGGAA AGCTCAGTTCCCAATTGGACCGAGGTTTCGTCTTCGATTTGGTTCCCACTCCGTTGAACGACGCCGGCGAGCCCGCTTGTTCAGTCGTCGACACCAAAGA TGACAAGGAAAGGACTGGCTCTAAATCCAAATCCCAGGTCTCTGATGCTTCCACTTTGCTTATCGACATGGACTGGGTAGCTAAACACGCTCGCCAGGTT TCCAGAATGTTGGTAGGTGGGATGAACGTGGTGGGAGTTTATGTTTGGGTTAGTGATACATCATTCAAGAACTCAACCATTACCCTTTGCCAGACAGTGC AAGGAGTTGCAGAAGCCGCCCCTATTCTAGAGGGGGATTTGGATCAAAGGCTGCTTCTTCATATATCTTATAGTCCCAGAAGGTGGACGTGTCGGAATTG TTTGCTGTCTTCAAGCATCACATCAAGCAGCATACGGCCCTGTGATTTCAAACTAGGGAAGGTCTTAAACTCTGTACAGAGATTTAGGTGCATTTACAAA TTTGAACTCAGATTGCCAATATCTGGTGAACTTGCATCAAATGGTTCAACACTGAGTGCAGTTCTTCGTCATGGAATCTCAACTGTTGGGAAACAGCTAA GAGGTGCAAAGGCTATTGTTGATGGAAATTTGATCAAAAGTGATGAGCCATGCACAACCGATTGTTTACATGATGTTGAATTGCTTCTGCCGATCACAGA ATGTGACCCTTCTACCGAAGCATGCAGGGAAAAGGATGTAGACGGTCTTCTTGTTTTTGGTGGATCTGTTTCCTCTTTCACATATCTCAACACCAAAGAA CCAGTTTCACAGGCCGTTGCTGACATAAAGTTTGATATAGCCAGAAGTCTGCAAAGCAGACTGGATATGATATGTGTTGGAGTAGATGAGGATCTTGCTG AAAAAGATGAAGGCCATGAGGAAGCAAGCGACAACAAACCGTCTCAAAATCCCATTTCCAGACTTGTCCTCCACTCTTTAAGGAAAACATGCCGTCTAGC CTTTCCGCGAAGAGTCTTCATTCCTTGGTTGGCTGATATATACATTTGCGACTACCTGCAACCTTCAGAGACGCTTGAGGTGATAAACGATCATTGTGTA GAGTTGATGTCGATGCAAGCCCCGAGTGATAGCTCAAGATTCCTGCAGCCAGAAGAGGAAGAAGCTCCATTTGTTATCTCAAAATCTTTCTGGGATGGCA ATGGGGATTCTTGTTTGGATAAGAAGAGAGAAGTTGATGCAAGTGCAGATAGTAGCATCAGAGAAACAAACGAGTCCTCTAACTATAGCTTGGTTTTGAC GCAAGATGCCGTACAGTTTTTGGGTGCAATTGTGTTGGTGTTATTATAA
AA sequence Show only first row Show all	>Lus10042926 pacid=23181660 polypeptide=Lus10042926 locus=Lus10042926.g ID=Lus10042926.BGIv1.0 annot-version=v1.0 MVKVVVGDEVQLKLAEDRLTHSGFTAQVGLVIGKLSSQLDRGFVFDLVPTPLNDAGEPACSVVDTKDDKERTGSKSKSQVSDASTLLIDMDWVAKHARQV SRMLVGGMNVVGVYVWVSDTSFKNSTITLCQTVQGVAEAAPILEGDLDQRLLLHISYSPRRWTCRNCLLSSSITSSSIRPCDFKLGKVLNSVQRFRCIYK FELRLPISGELASNGSTLSAVLRHGISTVGKQLRGAKAIVDGNLIKSDEPCTTDCLHDVELLLPITECDPSTEACREKDVDGLLVFGGSVSSFTYLNTKE PVSQAVADIKFDIARSLQSRLDMICVGVDEDLAEKDEGHEEASDNKPSQNPISRLVLHSLRKTCRLAFPRRVFIPWLADIYICDYLQPSETLEVINDHCV ELMSMQAPSDSSRFLQPEEEEAPFVISKSFWDGNGDSCLDKKREVDASADSSIRETNESSNYSLVLTQDAVQFLGAIVLVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	0	1
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	5.9	0.7509
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	6.9	0.7749
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	9.4	0.7429
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	10.2	0.7576
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	13.9	0.7129
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	16.4	0.7275
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	16.8	0.7499
					Lus10027520 [exp]	18.0	0.7253
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	23.9	0.7714
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	27.0	0.6694

Compare expression of checked genes

Lus10042926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.