Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65670 334 / 1e-113 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 325 / 2e-110 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT4G29080 260 / 7e-85 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT4G14550 206 / 8e-65 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G04730 201 / 1e-62 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 200 / 1e-62 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 186 / 3e-57 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 174 / 7e-53 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 162 / 2e-48 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 152 / 8e-45 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028222 [exp] 315 / 8e-107 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 299 / 3e-100 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 280 / 8e-93 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 240 / 5e-77 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10012984 [exp] 232 / 1e-73 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10039414 [exp] 192 / 4e-59 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 190 / 3e-58 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039413 [exp] 177 / 3e-54 AT1G04240 250 / 2e-85 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) Lus10039488 [exp] 177 / 3e-54 AT5G43700 247 / 3e-84 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108000 [exp] 451 / 6e-159 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.003G051300 [exp] 279 / 1e-91 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 269 / 8e-88 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.006G161400 [exp] 263 / 6e-86 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.013G041400 [exp] 214 / 6e-68 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 212 / 5e-67 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 211 / 7e-67 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 209 / 6e-66 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.010G078300 [exp] 207 / 2e-64 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.008G161200 [exp] 204 / 4e-64 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10042929 pacid=23181725 polypeptide=Lus10042929 locus=Lus10042929.g ID=Lus10042929.BGIv1.0 annot-version=v1.0 ATGACTCCGCCACTGCTTGGTGGTGTGGAGGAGGGTCAAATCAATGCTTCTCTGCTTGCTTCTTCGACATCCTTGGAAAGTGTTTGCCAAAATGGGTCTG CTGAACTGAAAGAGCGCAACTACATGGGGCTTTCTGATTCATCTTCGTCTGGAGATAGCTCCGTTATCTCTGCCGTGACCGGTGAAAGCAAGGCTAGGCT GAACCTTAAGGCGACAGAACTTCGGCTTGGGTTACCTGGATCTCAATCACCTGAAAGGAATTCCGAGCTTTGCTTATTTGGATCCAATAAACTCGATGAG AAGCCCCTCTTCCCTTTGCATCCAGTAAACGAGAGCAATGGGTCTTCCACGCCGAAAACTTTACTTTTGGGGAACAAAAGAGGGTTTTCGGATGTCATGG ATGGATTCTCAGAGGATAAGTTTTCTTCAAAACAAGATGTAAATGGGATGTTGTCCCCCAGGCCCTCTCATAACATGGGACTGAAGCCAGGTTCTATTCT CGAGAACCTGTCTACTCTACCGGCTAAAGCGAAAGAGGCCGTAGCGCAAAATGCTGCGCAGGAGAGGCCTCATGGTGCAAAGGACACTAGATCAAGCAAC AGCACAACACCGGCGGCTAAGGCACAAGTTGTGGGCTGGCCTCCTATCAGGTCCTTTAGGAAGAACTCACTTGCTACCTCCAAGAATACTGAGGAAGTAG ATGGAAAGGCAGGTGCTACTGCTTTGTACGTTAAAGTGAGCATGGATGGTGCCCCCTATCTTAGGAAGGTTGACTTGAGGAACTATTCTGCATACAAGGA ACTCTCTTCAGCTCTTGAGAAGATGTTCAGTTGTTTTACCATAGGTCAATATGGATCCCATGGAGCTTCAGGTAGGGAGGTGCTGACTGAAAGCAAGTTG AAAGATCTGCTGCATGGTTCAGAATATGTTCTCACCTACGAGGATAAAGATGGTGACTGGATGCTCGTTGGTGATGTTCCCTGGGAGATGTTTATTGAGA CCTGCAAGAGGTTGAGGATCATGAAGGGTTCTGACGCCATTGGTTTAGGTGGCTCCAAGGGCGGTAGAGAAGTCGAGGATCAAGAACTAGCCAGCAACGG TGCCCATCGTGAATGCCATTGA
AA sequence Show only first row Show all	>Lus10042929 pacid=23181725 polypeptide=Lus10042929 locus=Lus10042929.g ID=Lus10042929.BGIv1.0 annot-version=v1.0 MTPPLLGGVEEGQINASLLASSTSLESVCQNGSAELKERNYMGLSDSSSSGDSSVISAVTGESKARLNLKATELRLGLPGSQSPERNSELCLFGSNKLDE KPLFPLHPVNESNGSSTPKTLLLGNKRGFSDVMDGFSEDKFSSKQDVNGMLSPRPSHNMGLKPGSILENLSTLPAKAKEAVAQNAAQERPHGAKDTRSSN STTPAAKAQVVGWPPIRSFRKNSLATSKNTEEVDGKAGATALYVKVSMDGAPYLRKVDLRNYSAYKELSSALEKMFSCFTIGQYGSHGASGREVLTESKL KDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKGSDAIGLGGSKGGREVEDQELASNGAHRECH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10042929 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	8.5	0.8283
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	10.2	0.8445
AT3G03320			RNA-binding ASCH domain protei...		Lus10020510 [exp]	14.5	0.7159
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	15.2	0.7962
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	19.4	0.8091
AT1G60783			unknown protein		Lus10006204 [exp]	24.4	0.7894
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	25.0	0.7980
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	25.3	0.7896
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	27.5	0.7972
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	29.8	0.7628

Compare expression of checked genes

Lus10042929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.