Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49665 317 / 5e-98 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 184 / 1e-49 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 176 / 6e-47 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 172 / 6e-46 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT4G37890 173 / 1e-45 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 167 / 1e-43 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 156 / 5e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 115 / 1e-26 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028224 [exp] 428 / 1e-146 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 235 / 2e-67 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039634 [exp] 193 / 8e-55 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 172 / 2e-45 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 158 / 1e-40 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 155 / 2e-39 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 137 / 1e-33 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 124 / 2e-29 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 63 / 2e-10 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107902 [exp] 393 / 7e-127 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 184 / 2e-49 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 174 / 6e-46 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 155 / 1e-39 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 126 / 3e-30 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 120 / 2e-28 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 120 / 2e-28 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 118 / 7e-28 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042930 pacid=23181965 polypeptide=Lus10042930 locus=Lus10042930.g ID=Lus10042930.BGIv1.0 annot-version=v1.0 ATGGGTACTGGGTGGAGAAGAGCCTTTTGTACTACAGTGCCTAGAGATAAGCACCTTCCCAATCCCACTAGTCCTCCTCCTCCAACTACTTCAACCCCCA GGACGACTAAGAAGCTCTCTTTCTTCTCCTCCGGAACCAGTAGCAGCACTAGTAACCCTTCTACTCCTCGTCTCCGCCTGAGATCTCTTTCCAGTCCTTC TTTACGCTCCCGCCCTACTACCACTACTACTACTAGCTCATCATCAGCTAATGTCAACAATGACGACACTACTCCTACCCTCCATTGCAAGACTACTCAT AATACCCCCAGAGCAACAACCAAGACTACTGCTACTGCTACTCCCAAACCCAAACTCGCCTCCAATCCTTCTTCCCCTCGCTCTCCTCTCAAGCTCTCCC TCTTCAAGAACAGCTTTAAGTTCAGGGGCACGGCGATTTACACGGCGGAATGCTCTCACGCTTTTCACTTCCCTTGCATAGCTGACTATGTTCGTAAGAA TGGCAGCCTCGTCTGTCCAGTCTGCAACGCCGCCTGGAAAGATGTCCCTCTCCTCGCTTTCCACAAGAATCTCCATCCTCAAAACCAACCCACTACGGTC AAGCCTCCAATTGAGGACAAGAGGGTGGTCATGGTTGACTCTTCTCCCAGAGCGGTCAAGACGGTCTCCTCTAACTCTAAGCTAGAACCGTCTCCCCCCA AATCCTCCGATTTCAGATCTTACGATGACGACGAGCCCCTTCTATCTCCCACCGCCGGCGGCAGGTTTATCCCGATTCCCGAGGCTGCAGATGAGAATGT CGACGAGGAGGAGGAAATACAAGTCGATGTCGAGGAGTTTCAAGGATTCTTCGTCAATCCCACTCATTCAATGAAATCCGAGGAGACGCCGTTGATCGGC AGGGACTCCAGAACTGTTCAGGTCAGTTTGTTACCTGATTCCGCCGTCGTATCCGTCGGCCACGGCTCCGAAACATATGCGGTTGCATTAAGGGTGAAAG CTCCTCCGCCTTTAGTACAATCGGTATCGAATAGAGGTAACGCTTCTGCGACGAGTCGAGCTCCGATCGATTTAGTTGCAGTACTGGATGTCAGTGGTAG CATGGCCGGCCCTAAGCTATTGATGCTGAAACGAGCTATGCGTTTGGTGATCTCCTCCTTGGGATCGGCTGACCGCCTCTCTATCGTGGTTTTCTCATCC GTTCCGAAGCGACTGTTGCCATTGATGAGGATGACAGCTCACGGTCAGCGTGCAGCTCGGCTCATCGTTGACCGGCTGGTTTGCGGTCAAGGGAGCAGTG TGGCTGAAGCTCTAAGGAAAGCGGCGAAGGTGCTGGAAGATAGGAGAGAGAAAAATCCGGTGGCGACGACTCTCATTTCGTGGAACGGCTGGACTACGGT ATTGAGCTCCGGCTCGGTTCGTCTAGGTGATCTGTATGCAGAAGAAGAAAGGGAGCTATTGGTGGAGCTGCGTGTTCCGTCGTCGGCGGTGGGACGCCAT CACGTGATGTCTGTGAGGTGCCTTTACAAAGATCCGGGGACAGAAGAAGTTGTGTACGGACGGGATCAGGCGCTGCTAGTTCCAAGGCCGCACGCCGTCC GTTCGTCAGCGCCGAAGGTAGAGCGGTTGAGGAATCTATTCATAACGACGAGAGCGGTGGCGGAGGCGGGGAGGGTGGGGGCTGGTGGAGCACAGCAACA ATTTCACGAGCGCGCATCACTTGCTGGCGTCAACGAGGGTGTTACTAATGCAGTCGGAGTACGAAGGGGCGGAGGAGTACAGGAAGGTGGTGGAGGTGGA GCTAGCCGAGCTACACTGGAGGAAACAACAGGAGATAGAAGCGGGGGCGATGATGATGCAACGGCAACGGAGGAGAGGAGGAGAGAGGGAAGCAGCGGCG GTGATGACGGACGAGAACGGAGAGCCGTTAACGCCGACATCGGCTTGGAGAGCGGCTGA
AA sequence Show only first row Show all	>Lus10042930 pacid=23181965 polypeptide=Lus10042930 locus=Lus10042930.g ID=Lus10042930.BGIv1.0 annot-version=v1.0 MGTGWRRAFCTTVPRDKHLPNPTSPPPPTTSTPRTTKKLSFFSSGTSSSTSNPSTPRLRLRSLSSPSLRSRPTTTTTTSSSSANVNNDDTTPTLHCKTTH NTPRATTKTTATATPKPKLASNPSSPRSPLKLSLFKNSFKFRGTAIYTAECSHAFHFPCIADYVRKNGSLVCPVCNAAWKDVPLLAFHKNLHPQNQPTTV KPPIEDKRVVMVDSSPRAVKTVSSNSKLEPSPPKSSDFRSYDDDEPLLSPTAGGRFIPIPEAADENVDEEEEIQVDVEEFQGFFVNPTHSMKSEETPLIG RDSRTVQVSLLPDSAVVSVGHGSETYAVALRVKAPPPLVQSVSNRGNASATSRAPIDLVAVLDVSGSMAGPKLLMLKRAMRLVISSLGSADRLSIVVFSS VPKRLLPLMRMTAHGQRAARLIVDRLVCGQGSSVAEALRKAAKVLEDRREKNPVATTLISWNGWTTVLSSGSVRLGDLYAEEERELLVELRVPSSAVGRH HVMSVRCLYKDPGTEEVVYGRDQALLVPRPHAVRSSAPKVERLRNLFITTRAVAEAGRVGAGGAQQQFHERASLAGVNEGVTNAVGVRRGGGVQEGGGGG ASRATLEETTGDRSGGDDDATATEERRREGSSGGDDGRERRAVNADIGLESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	0	1
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	1.4	0.9411
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	2.4	0.9133
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	4.9	0.8989
AT4G39900			unknown protein		Lus10041703 [exp]	7.3	0.8475
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	7.5	0.8743
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	8.1	0.8943
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	9.6	0.8959
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	11.0	0.8670
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	12.0	0.8784
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	14.1	0.8612

Compare expression of checked genes

Lus10042930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.