Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58290 338 / 6e-115 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) AT1G09940 297 / 5e-99 HEMA2 Glutamyl-tRNA reductase family protein (.1) AT2G31250 249 / 2e-80 HEMA3 Glutamyl-tRNA reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028226 [exp] 423 / 5e-148 AT1G58290 801 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107800 [exp] 372 / 4e-128 AT1G58290 756 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.009G080600 [exp] 278 / 2e-91 AT1G58290 672 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.001G286400 [exp] 263 / 1e-85 AT1G58290 666 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00745 [flax] [poplar] GlutR_dimer Glutamyl-tRNAGlu reductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042931 pacid=23181651 polypeptide=Lus10042931 locus=Lus10042931.g ID=Lus10042931.BGIv1.0 annot-version=v1.0 ATGCTCGCTTGTGCAGCTGAATCCGATGTGGTATTCACCAGCACTGCATCGGATGTCCCGCTGTTTCTAAAAAAACATGTCGAGCAACTCCCAGCTGTTA GCTCGGAAGTTGGAGGCTCGAGATTATTTGTCGACATTTCTGTTCCGAGGAATGTTGGCTCGTGCGTTAATGACCTTGAAAACGTTCGCGTGTACAACGT GGACGACCTTAAGGAGGTTGTAGCTGCTAACAAAGAGGATCGCCTCAGGAAAGCAATGGAAGCTCTAGATATCATCACTGAGGAAACGAAGCAATTCGAA GCTTGGAGGGATTCGCTCGAGACTGTACCAACCATCAAGAAACTGAGAGCATATGCCGAGAGGATCAGGCTAGCGGAGCTGGATAAATGTCTTTCGAAAA TGGGTGGTGAAGAGATCCCAAAGAAGACGAGGAGAGCTGTAGATGATCTCAGTCGCGGCATTGTTAATAAGCTATTACACGGACCGATGCAGCACTTAAG ATGCGACGGGAGTAGCAGCCGTACTCTTACTGAGACACTTGAGAATATGCATGCGCTTAACAGGATGTTCAGCTTGGAAACAGAAATAGCTATCCTGGAA CAAAAGATTCGAGCCAAAACCGGCCAGAAGTAA
AA sequence Show only first row Show all	>Lus10042931 pacid=23181651 polypeptide=Lus10042931 locus=Lus10042931.g ID=Lus10042931.BGIv1.0 annot-version=v1.0 MLACAAESDVVFTSTASDVPLFLKKHVEQLPAVSSEVGGSRLFVDISVPRNVGSCVNDLENVRVYNVDDLKEVVAANKEDRLRKAMEALDIITEETKQFE AWRDSLETVPTIKKLRAYAERIRLAELDKCLSKMGGEEIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSSSRTLTETLENMHALNRMFSLETEIAILE QKIRAKTGQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	0	1
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	1.4	0.9072
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	6.5	0.8889
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	10.6	0.8779
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	11.6	0.8864
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	13.7	0.8848
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	14.1	0.8816
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	24.4	0.8382
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	27.2	0.8208
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	27.9	0.8781
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	28.0	0.8796

Compare expression of checked genes

Lus10042931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.