Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09940 372 / 3e-126 HEMA2 Glutamyl-tRNA reductase family protein (.1) AT1G58290 365 / 2e-123 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) AT2G31250 285 / 4e-92 HEMA3 Glutamyl-tRNA reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028226 [exp] 542 / 0 AT1G58290 801 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107800 [exp] 393 / 4e-134 AT1G58290 756 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.001G286400 [exp] 336 / 7e-112 AT1G58290 666 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.009G080600 [exp] 327 / 3e-108 AT1G58290 672 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05201 [flax] [poplar] GlutR_N Glutamyl-tRNAGlu reductase, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042932 pacid=23181958 polypeptide=Lus10042932 locus=Lus10042932.g ID=Lus10042932.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCGAGCGGTGTCGCTACTACCTTGGCAGCAGCCAAGATGGAGGCTTTCTTGTTGAATACTTCATTCCCGTCGGCTTCCTCATCGGGGTCGC CCTCGTCTCTCCGGGCTTATCTGGCTACCTCTCAACTGAAGATCAACTGCTCCAGGAGCAGAAATAAGAGTTCAATGCTGAGAGGAGGACTCAGATTTGA TATCACCGCCGCTTCTTCTGTAGAAGATGGTGTGGTTGAGACTGCCGACACTCGGATTGGCCTCGACAACGTTTCTAGCCAGTCTGCCCTTGAGCAGCTC AAGACATCCGCCGCTGATAGATATACAAAGGAAAGGGCAAGCATTGTGGCAATTGGACTGAGCGTGCATACTGCACCAGTTGAGATGCGTGAGAAGCTTG CTATTCCAGAAGCTGAATGGCCTAGAGCCATTGCTGAACTTTGTAGCCTCAACCATATTGAAGAGGCTGCCGTGCTCAGTACTTGCAACCGTATGGAGAT TTATGTTGTAGCCCTTTCTCAGCATCGTGGCGTTAAAGAAGTCACCGACTGGATGTCCAAGACAAGCGGCATCCCTGCATCAGAAATCTGCGAGCACCGA TTCCTGCTCTACAACAACGATGCAACGCGCCACTTGTTTGAAGTATCTGCTGGTCTCGACTCGTTGGTTCTCGGAGAGGGTCAGATCCTCGCGCAGGTTA AGCAAGTTGTGAATGTCGGCCAAGGTGTTGTTGGGTTTGGCAGGAACATAAGCGGGTTATTCAAACACGCAATAACCGTTGGGAAACGTGTCAGGTCGGA GACAAGCATTGCTGCTGGGGCTGTTTCAGTGAGCTCTGCTGCAGTTGAACTTGCACTCATGAAAATCCCCAAAGCCGCACACTCCACTGCCCGAATGTTG GTTATCGGTGCAGGCAAGATGGGGAAGCTTGTGATCAAGCACTTAGCGGCGAAAGGCTGCAGCACTTGGCGGCGAAAGGCTGCACGAAGATGGTGGTTGT TAACCGATCGGAGGAAAGAGTGGCGGCCATACGAGAAGAGATAA
AA sequence Show only first row Show all	>Lus10042932 pacid=23181958 polypeptide=Lus10042932 locus=Lus10042932.g ID=Lus10042932.BGIv1.0 annot-version=v1.0 MAVSSGVATTLAAAKMEAFLLNTSFPSASSSGSPSSLRAYLATSQLKINCSRSRNKSSMLRGGLRFDITAASSVEDGVVETADTRIGLDNVSSQSALEQL KTSAADRYTKERASIVAIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTDWMSKTSGIPASEICEHR FLLYNNDATRHLFEVSAGLDSLVLGEGQILAQVKQVVNVGQGVVGFGRNISGLFKHAITVGKRVRSETSIAAGAVSVSSAAVELALMKIPKAAHSTARML VIGAGKMGKLVIKHLAAKGCSTWRRKAARRWWLLTDRRKEWRPYEKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	4.9	0.8589
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	6.1	0.8690
AT1G69160			unknown protein		Lus10026677 [exp]	6.5	0.8196
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	7.7	0.8466
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	8.7	0.8470
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	9.5	0.8346
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	9.9	0.8570
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	12.0	0.8226
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	13.3	0.8336
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	14.1	0.8267

Compare expression of checked genes

Lus10042932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.