Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65690 523 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1) AT4G37870 521 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019242 [exp] 528 / 0 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10011582 [exp] 512 / 4e-177 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10028227 [exp] 488 / 1e-168 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107700 [exp] 578 / 0 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Potri.007G011200 [exp] 534 / 0 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0374 [flax] [poplar] PEP-carboxyk PF01293 [flax] [poplar] PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence Show only first row Show all	>Lus10042933 pacid=23181871 polypeptide=Lus10042933 locus=Lus10042933.g ID=Lus10042933.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGCGGTGGGGCTAATGACAACAACGGTCAGTTCAGCTTCTCCTCGGGGAATAACCGTGCTGCTGCTACTGTAGTAACCAAGGGACGGAACG GTCTGCCTAAGATCCAGACGCAGGATGACAGCAAGAAGTTCAGCAACGCCGGAGCCAAGGGATCGCCCAGCGCAGCCAACGCGGAGGATCTGTGCTACGA CGACAGCGCTACACCGATCAAGGCTCAGACGCTGGATGAGCTCCATTCCCTTCAGAAGAAGAGATCCACCCCTTCGACTCCCATGACCGCTCCTGCTGCG GTGGCCGCCGCCAATCAGGGCGGCGGCGCCTTCTTCACCGCCATCTCGGAGGAAGAGAGGCAGCGGCAGCAGCTGCAGTCGATCAGTGCGTCTCTGGCGT CGCTGACGAGGGAGACTGGGCCTAAGGTGGTGAAGGGAGATCCCGCGAGGAGGGGCCCAGCAGCGGCGGCCCAGAAGGTGGGACACGTGGAGCATTATAC GCCGACGATCAGCGCCAGTGACAGTTCGCTCAAATTCACTCACGTCCTCTACAACCTCTCCCCTGCTGAGCTGTACGAGCAAGCGATAAAGTATGAGAAA GGGTCGTTCATAACGGCGACGGGGGCACTGGCGACGCTTTCAGGGGCCAAAACGGGAAGATCGCCAAGGGATAAGCGTGTTGTTAGGGACGATACCACTG AGGAGCATCTTTGGTGGGGAAAGGGATCGCCAAACATCGAGATGGATGAGCATACGTTCTTGGTCAACAGGGAGCGAGCTGTGGATTATTTGAACTCACT GGACAAGGTGTTTGTGAACGATCAATTTCTTAACTGGGATCCAGAACACAGGATCAAAGTCCGTATTGTTTCCGCCAGGGCATATCACTCTTTGTTCATG CACAATATGTGCATCAGACCGACGCCGGAGGAGCTGGAGAACTTTGGGACACCAGACTTCACAATATACAATGCAGGGCAGTTCCCCTGTAACCGTTACA CTCACTACATGACCTCTTCAACTAGCATTGACATGAACCTTGGGAGGAGGGAAATGGTGATTTTGGGAACCCAGTATGCTGGAGAGATGAAGAAAGGACT CTTCAGTGTCATGCACTATCTCATGCCTTTGCGTGGCATCCTGTCTCTCCACTCTGGTTGCAACATGGGCAAATCTGGAGATGTTGCCCTCTTCTTTGGC TTATCAGGCACTGGGAAGACTACACTGTCGACTGATCATAACAGGTATTTGATTGGAGACGATGAGCACTGTTGGAGCGACAACGGCGTCTCAAATATCG AAGGCGGTTGTTATGCTAAATGCATTGATCTAGCTGCCGAGAAGGAGCCTGATAGTCGTGTTCGATGA
AA sequence Show only first row Show all	>Lus10042933 pacid=23181871 polypeptide=Lus10042933 locus=Lus10042933.g ID=Lus10042933.BGIv1.0 annot-version=v1.0 MASGGGANDNNGQFSFSSGNNRAAATVVTKGRNGLPKIQTQDDSKKFSNAGAKGSPSAANAEDLCYDDSATPIKAQTLDELHSLQKKRSTPSTPMTAPAA VAAANQGGGAFFTAISEEERQRQQLQSISASLASLTRETGPKVVKGDPARRGPAAAAQKVGHVEHYTPTISASDSSLKFTHVLYNLSPAELYEQAIKYEK GSFITATGALATLSGAKTGRSPRDKRVVRDDTTEEHLWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFM HNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDMNLGRREMVILGTQYAGEMKKGLFSVMHYLMPLRGILSLHSGCNMGKSGDVALFFG LSGTGKTTLSTDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLAAEKEPDSRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042933 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	4.4	0.9423
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	9.3	0.9273
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	10.8	0.9237
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	10.9	0.8529
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	11.8	0.9204
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10012656 [exp]	15.0	0.8845
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	16.3	0.9122
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	16.4	0.9189
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	17.0	0.9118
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	17.3	0.8960

Compare expression of checked genes

Lus10042933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.