Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37870 361 / 3e-122 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1) AT5G65690 358 / 6e-121 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019242 [exp] 352 / 1e-118 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10011582 [exp] 347 / 1e-116 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10028227 [exp] 271 / 6e-88 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107700 [exp] 363 / 8e-123 AT4G37870 1039 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Potri.007G011200 [exp] 357 / 1e-120 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0374 [flax] [poplar] PEP-carboxyk PF01293 [flax] [poplar] PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence Show only first row Show all	>Lus10042934 pacid=23181755 polypeptide=Lus10042934 locus=Lus10042934.g ID=Lus10042934.BGIv1.0 annot-version=v1.0 ATGGAGCTTAGATTGATATATTTCGAGAACACAAGGGCAGCATACCCAATTGAGTACATCCCCAACGCAAAGCTACCTTGTGTCGGTCCTCATCCAAAGA ACGTCATCCTTCTGGCGTGTGATGCATTCGGCGTGCTTCCTCCAGTGAGCAAGCTGAACCTGGCGCAGACCATGTACCATTTCATCAGTGGCTACACTGC TCTGGTGGCTGGTACAGAGGATGGTATCAAGGAGCCTCAGGCAACCTTCTCAGCCTGCTTTGGTGCTGCTTTCATAATGATGCATCCTACTAGGTATGCG GCAATGCTGGCAGAGAAGATGGAGAAGCATGGAGCTACCGGATGGCTAGTTAACACAGGCTGGTCTGGTGGAAGCTATGGATCTGGGAGCCGTATGAAGC TGGCTTATACTCGAAAGATCATCAACGCAATACACTCAGGGGAACTTCTCAACGCAAATTACTCTACGACGGATATATTCGGGCTTGAAATCCCATCAGA GATTGAGGGCGTTCCTTCAGAAATTCTTGATCCTATAAACACTTGGTCAGACAAGAAGGCGTACAAGGATACTCTGCTGAAATTGGGAGGTCTGTTCAAA AAGAACTTTGAAGTGTTTGCCAATCACAAGATAGGGAAGGACGGCAAGCTCACTGATCAGATTCTTGCTGCCGGCCCTAATTTCTAA
AA sequence Show only first row Show all	>Lus10042934 pacid=23181755 polypeptide=Lus10042934 locus=Lus10042934.g ID=Lus10042934.BGIv1.0 annot-version=v1.0 MELRLIYFENTRAAYPIEYIPNAKLPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMMHPTRYA AMLAEKMEKHGATGWLVNTGWSGGSYGSGSRMKLAYTRKIINAIHSGELLNANYSTTDIFGLEIPSEIEGVPSEILDPINTWSDKKAYKDTLLKLGGLFK KNFEVFANHKIGKDGKLTDQILAAGPNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	0	1
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	1.4	0.9698
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	2.0	0.9665
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	3.5	0.9626
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	3.9	0.9623
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042933 [exp]	4.4	0.9423
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	4.9	0.9632
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	6.0	0.9584
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	6.3	0.9556
AT2G36630			Sulfite exporter TauE/SafE fam...		Lus10020733 [exp]	7.5	0.9186
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	8.5	0.9507

Compare expression of checked genes

Lus10042934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.