Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53710 506 / 3e-176 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036645 [exp] 893 / 0 AT1G53710 589 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Lus10042936 [exp] 441 / 4e-155 AT1G53710 206 / 1e-63 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161100 [exp] 544 / 0 AT1G53710 637 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10042935 pacid=23167940 polypeptide=Lus10042935 locus=Lus10042935.g ID=Lus10042935.BGIv1.0 annot-version=v1.0 ATGAAACAATACCACAAGTTGACAGCGGTGCTGTGTGTCGTATGGATGGTCACCATTCTCTACGGCGAGATGTTTGCCTTTTGGATGCCTTCTTTCTTCT CTTGTTCCTGGCCTCACCACTCCCCTTCTTCTTCCTCTTCCTCCTCGGTATTCATCCTCTACCAAATCCGCGAAGAAGTCCGGATTGCCGTCTTAACCGA TCCGCAGTTAATGGATAAAGCATCACACCCAACGCTGCCCAAGTCGCTTTTGGGGATGGCACAGTTCTACACCGACATTTACATGCGTAGAGCCTTTTTC TCTTCTGTGTTGCCATTGAAACCCAATGTCATTTTGTTTCTTGGTGATTATTTTGATGGTGGCCCGGACTTGTCTGATGCAGAATGGCAGGATTCTTTGC ATCGTTTGAAGCATGTCTTTGATTTGGATGCCAAGTCGAGAGATTCGAATATCCCGGTTTTCTTCATCCCTGGAAACCATGATGTTGGCTACTCAAGCAT CAATTCCCATAAGCCAGAGGTCGTTGGGCGCTATGAGAAAGAATTTGGAAATAGAAACTTTTGGTTTGCGATTGGTAAAATAGAGTTCATTGTTGTGGAT GCTCAAACTCTGGATGGGAATCCCCAGTCGGAAATAACTTCCAAAGCCTGGGAATTCGTGAAGAATGTCTCCGAAGGCAATGACTTGATGCCAAAGATTT TATTGACCCATATTCCATTATACCGGCCGGATAATACACATTGTGGGCCGCTACGAAAATCTCCAATAATTAACCAGGTACTTGTTTTGTCAGGACATGA TCATGATCAGTGTACAGTACTTCATGATTCAAAATCCGGGCCAGTTAGTGAGCATACAGTGGGAACCGTAAGCTGGCAGCAAGGGAATTTGTACCCATCA TTCATGCTATTGTCTATTGCTGAGAACTCAACAAATCGTAGTATGCGCATCCCTAAAGAAGCTCTCAAGACCAATCTCTGCTTTCTTCCTGTGCAAACTC AGGTTTACATATGGTACCTTTTACTCTTCAACTTGACAATTTTCGCTCTTCTCTTATGGCCGGCAAAGGGTGTAAACCTGGAGCACTACTGGAGTTTCCT AGCTGCATTCATCCGACCATATAGTATCTTGTTCAGAGGTGGGGCGAAGGAGAAAAGTGATGATGACAATTGCGAGTACGACGTGGTGTGGGATGCCGAA GGATCGATGCATCTTGTGAAGAAAGTATTAGCCGCCCCTAATACTGCGATTCAAACGGATAATGGTGTCATGGAAAGGAGGAATGCTGTTATGCGTCCAA CAGCAAGGAAAAACACAACTCCAGCCGAGGGAGGAGATTTTTTGCTGGAGGTAGACTTGAATGGAGGAGATGGCGATCCGAGTTCAAAAGTATGGTCGAG AACGAGTAGGTCGAGAACGAAAATCGTGATTCAAAGAGTAATGAGAGCGACCCGAATGATTATGGTGATAGCTGCAGTGAACGGTACACTATACATGATG TTACTTTTCAAGGATTCGATGGACCAGTGA
AA sequence Show only first row Show all	>Lus10042935 pacid=23167940 polypeptide=Lus10042935 locus=Lus10042935.g ID=Lus10042935.BGIv1.0 annot-version=v1.0 MKQYHKLTAVLCVVWMVTILYGEMFAFWMPSFFSCSWPHHSPSSSSSSSVFILYQIREEVRIAVLTDPQLMDKASHPTLPKSLLGMAQFYTDIYMRRAFF SSVLPLKPNVILFLGDYFDGGPDLSDAEWQDSLHRLKHVFDLDAKSRDSNIPVFFIPGNHDVGYSSINSHKPEVVGRYEKEFGNRNFWFAIGKIEFIVVD AQTLDGNPQSEITSKAWEFVKNVSEGNDLMPKILLTHIPLYRPDNTHCGPLRKSPIINQVLVLSGHDHDQCTVLHDSKSGPVSEHTVGTVSWQQGNLYPS FMLLSIAENSTNRSMRIPKEALKTNLCFLPVQTQVYIWYLLLFNLTIFALLLWPAKGVNLEHYWSFLAAFIRPYSILFRGGAKEKSDDDNCEYDVVWDAE GSMHLVKKVLAAPNTAIQTDNGVMERRNAVMRPTARKNTTPAEGGDFLLEVDLNGGDGDPSSKVWSRTSRSRTKIVIQRVMRATRMIMVIAAVNGTLYMM LLFKDSMDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	0	1
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	4.2	0.8202
AT5G42470			unknown protein		Lus10033139 [exp]	4.2	0.7885
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	5.7	0.7950
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	7.9	0.8055
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	8.7	0.8063
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	10.5	0.7946
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	13.0	0.7862
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	17.6	0.6555
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	17.7	0.7285
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	24.7	0.7168

Compare expression of checked genes

Lus10042935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.