Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53710 190 / 3e-57 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042935 [exp] 441 / 2e-155 AT1G53710 556 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Lus10036645 [exp] 408 / 6e-142 AT1G53710 589 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161100 [exp] 218 / 6e-68 AT1G53710 637 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042936 pacid=23168421 polypeptide=Lus10042936 locus=Lus10042936.g ID=Lus10042936.BGIv1.0 annot-version=v1.0 ATGGGACGTTGCATTTATTCCGATAATTCTATTCAGCATACAGTGGGAACCGTAAGCTGGCAGCAAGGGAATTTGTACCCATCATTCATGCTATTGTCTA TTGCTGAGAACTCAACAAATCGTAGTATGCGCATCCCTAAAGAAGCTCTCAAGACCAATCTCTGCTTTCTTCCTGTGCAAACTCAGGTTTACATATGGTA CCTTTTACTCTTCAACTTGACAATTTTCGCTCTTCTCTTATGGCCGGCAAAGGGTGTAAACCTGGAGCACTACTGGAGTTTCCTAGCTGCATTCATCCGA CCATATAGTATCTTGTTCAGAGGTGGGGCGAAGGAGAAAAGTGATGATGACAATTGCGAGTACGACGTGGTGTGGGATGCCGAAGGATCGATGCATCTTG TGAAGAAAGTATTAGCCGCCCCTAATACTGCGATTCAAACGGATAATGGTGTCATGGAAAGGAGGAATGCTGTTATGCGTCCAACAGCAAGGAAAAACAC AACTCCAGCCGAGGGAGGAGATTTTTTGCTGGAGGTAGACTTGAATGGAGGAGATGGCGATCCGAGTTCAAAAGTATGGTCGAGAACGAGTAGGTCGAGA ACGAAAATCGTGATTCAAAGAGTAATGAGAGCGACCCGAATGATTATGGTGATAGCTGCAGTGAACGGTACACTATACATGATGTTACTTTTCAAGGATT CGATGGACCAGTGA
AA sequence Show only first row Show all	>Lus10042936 pacid=23168421 polypeptide=Lus10042936 locus=Lus10042936.g ID=Lus10042936.BGIv1.0 annot-version=v1.0 MGRCIYSDNSIQHTVGTVSWQQGNLYPSFMLLSIAENSTNRSMRIPKEALKTNLCFLPVQTQVYIWYLLLFNLTIFALLLWPAKGVNLEHYWSFLAAFIR PYSILFRGGAKEKSDDDNCEYDVVWDAEGSMHLVKKVLAAPNTAIQTDNGVMERRNAVMRPTARKNTTPAEGGDFLLEVDLNGGDGDPSSKVWSRTSRSR TKIVIQRVMRATRMIMVIAAVNGTLYMMLLFKDSMDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	0	1
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	3.6	0.8458
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	3.7	0.8382
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	5.7	0.8229
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	5.7	0.8081
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	7.5	0.7596
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	8.4	0.8354
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	8.7	0.8368
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	8.8	0.8285
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	11.6	0.8161
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	11.9	0.8378

Compare expression of checked genes

Lus10042936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.