Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48090 416 / 2e-138 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 397 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) AT3G52430 109 / 3e-25 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 64 / 3e-11 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G07400 59 / 8e-09 lipase class 3 family protein (.1) AT5G67050 45 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 43 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036644 [exp] 830 / 0 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036643 [exp] 200 / 1e-61 ND 44 / 8e-06 Lus10039617 [exp] 184 / 3e-50 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 179 / 4e-48 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10039472 [exp] 80 / 1e-15 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10009502 [exp] 78 / 6e-15 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 78 / 1e-14 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10032169 [exp] 78 / 1e-14 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 76 / 2e-14 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G074700 [exp] 676 / 0 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 663 / 0 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G074600 [exp] 258 / 1e-80 AT3G48080 156 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 206 / 3e-58 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 186 / 2e-51 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G290600 [exp] 96 / 1e-20 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 89 / 3e-18 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 80 / 2e-15 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 77 / 2e-14 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.002G249400 [exp] 61 / 2e-09 AT3G07400 1235 / 0.0 lipase class 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10042937 pacid=23168441 polypeptide=Lus10042937 locus=Lus10042937.g ID=Lus10042937.BGIv1.0 annot-version=v1.0 ATGGGTAGCGTGAATCTATTGGATAACCTGAACGTGAAAGCGGAGCTAGTGAAGAAAGCTTGCTCCCTCGCCGTCAAATCCCACAAGTCGCAGCAGCTTT TCCAATCTGAAAAGTCCCGGGGATCGCCGGAAGTTGTCTTCAGCTTCCCTGGGAGTTGGAACCTTGGGGATTGGATCAGTAAGCCGCCGTTCGGTGAAGT TGAGGTGGATCTTCAGCTTTTCCCTTCCCTCTTGTATATCGGTCTCAAGGAACCCGGCTCTGTCAATGAAGCTTTCTTGCGGAGGTTCACGGCCGTTTTG GCCCCTCCGCAACAGTTCGTCACCGAGGTTGAGAAGGCTATTAGAGAAAAGAAGCAGGTGGTGTTCACGGGACACTCTTTAGGAGGGCCAATAGCCATCT TAGCAACAATTTGGTTCCTGGAGAAGTACGTCAAGAGTGAAAATCGGCCAATCAAGCCTCTATGCCTTACATTTGGTTCTCCCCTCGTTGGCGATCGCTT CCTGAACCATGCCCTTAAGCGGGAAAAGTGGTCTCAACTCTTCATCCATTTCGTCATGAGATACGACATTGTCCCCAGGATCTCGCTCACCCCTTTCTCC TCACCCACTGATAGACGACTCCTGGAAATAGCCCTCGACTTCTTCAACCCGAAACCCGCACAAAACCCGTCTTCTGATGATGCACGGAGACTCTATGTCA ACGTGATGAGGAGTTCATCCTCTGTCGCCAGCCATGCTGCTTGCAAGATCATGGGTAACACAAACCTTTTGCTGGAGACCGTCTCTGGTTTCGTCGAGCT AAGCCCTTACAGGCCGTTTGGGACCTACGTTTTCGCCACTGGTAACGGGAAACTTGTCATCCTGAGGAACCCAGATGCGGTTCTGCAGGTGCTGTTTTAT TCGTCTCAGTTAAATTCTCCAGGGGAAGATGCGGAGGTGGCTGCAAGGAGCCTAAAGGATCATTTGGGTTACAAAGATGAACTTAAGGAATGCTTGGAGA TGCAGAGTGTTACTTACTTGGATCATGATTCTCTTGCAAATCTTCCTTTGTCCTCCGATTCAGCAACTCCTGAGAATGCTGCTGTCAATGAAGCCTTGAA TGATCTTGGCCTTAGTGTAAGAGGGAGACTATGCCTCCGAGCAGCAGCGGAGTTGGAGAAGCAGAAGAGTAAGAATCAAGCAACCATAGACGGGAAGGTG AAAGACATAGAGAAAGGGATACAGAAGCTGGAGAGTTACAAGAACAAGTGTGCTCTACGGGGCAGGACTTACTATGGGGCATTCAGGCTGTCAGAGGACA AGAGTGATTTCGAGGCAAACGTGACCAGGCTCGAGCTAGCTGGAATGTGGGACGAGATCATCGAGATGTTAAAAAGATACGAACTTCCTGACGATTTTGA GGGCAACGAAGACTGGATCAAACTCGGTACTAGGTTCAGAGTCCTGACTGAGCCATTGGACATTGCAAACTACTACAGACACTCGAAGAATGAAGACACT GGGCCTTATATGGGAAGGGGTAGGCCGAAACGGTACAAGTGTACTCAGAGATGGAAGGAACATTTGGAGAGGGTGAGTATGGAGCCGCCGGATTCGTGTT TGTGGGCTGAGGTGGAGGAGCTTCTTATTGCAGCAAAGGGTCCGGTAACAGTAGAACGTGTTAAGACATTGAAGAGGAAAGTCGAGGAGTATAAGATGCA GTCGGATGTGTATTTGGAAGACAGCATGTTTGTGAAGTTGTTGAAGATGAACAATATCCCTTATCCTTGA
AA sequence Show only first row Show all	>Lus10042937 pacid=23168441 polypeptide=Lus10042937 locus=Lus10042937.g ID=Lus10042937.BGIv1.0 annot-version=v1.0 MGSVNLLDNLNVKAELVKKACSLAVKSHKSQQLFQSEKSRGSPEVVFSFPGSWNLGDWISKPPFGEVEVDLQLFPSLLYIGLKEPGSVNEAFLRRFTAVL APPQQFVTEVEKAIREKKQVVFTGHSLGGPIAILATIWFLEKYVKSENRPIKPLCLTFGSPLVGDRFLNHALKREKWSQLFIHFVMRYDIVPRISLTPFS SPTDRRLLEIALDFFNPKPAQNPSSDDARRLYVNVMRSSSSVASHAACKIMGNTNLLLETVSGFVELSPYRPFGTYVFATGNGKLVILRNPDAVLQVLFY SSQLNSPGEDAEVAARSLKDHLGYKDELKECLEMQSVTYLDHDSLANLPLSSDSATPENAAVNEALNDLGLSVRGRLCLRAAAELEKQKSKNQATIDGKV KDIEKGIQKLESYKNKCALRGRTYYGAFRLSEDKSDFEANVTRLELAGMWDEIIEMLKRYELPDDFEGNEDWIKLGTRFRVLTEPLDIANYYRHSKNEDT GPYMGRGRPKRYKCTQRWKEHLERVSMEPPDSCLWAEVEELLIAAKGPVTVERVKTLKRKVEEYKMQSDVYLEDSMFVKLLKMNNIPYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10042937 [exp]	0	1
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	3.5	0.8355
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	5.2	0.8560
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	9.9	0.8423
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10022375 [exp]	11.1	0.8428
AT1G61930			Protein of unknown function, D...		Lus10006775 [exp]	16.9	0.8291
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	19.3	0.7746
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	25.7	0.7791
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	27.3	0.8101
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	28.3	0.8223
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	28.6	0.8300

Compare expression of checked genes

Lus10042937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.