Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19050 152 / 8e-47 ARR7 response regulator 7 (.1) AT1G74890 150 / 5e-46 ARR15 response regulator 15 (.1) AT3G48100 139 / 8e-42 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 135 / 3e-40 ARR6 response regulator 6 (.1) AT1G59940 135 / 6e-40 ARR3 response regulator 3 (.1) AT1G10470 135 / 3e-39 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT3G57040 117 / 2e-32 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 116 / 2e-32 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G56380 114 / 2e-32 ARR17 response regulator 17 (.1) AT2G40670 107 / 9e-30 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036642 [exp] 292 / 6e-102 AT1G19050 160 / 6e-50 response regulator 7 (.1) Lus10042153 [exp] 224 / 7e-75 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 218 / 3e-72 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10010723 [exp] 155 / 2e-47 AT1G10470 155 / 1e-46 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030664 [exp] 144 / 2e-42 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10029211 [exp] 143 / 3e-42 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 142 / 7e-42 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10039524 [exp] 122 / 1e-34 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 118 / 4e-33 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070000 [exp] 184 / 9e-59 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.019G058900 [exp] 129 / 4e-38 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.T124806 [exp] 129 / 1e-37 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.003G197466 [exp] 128 / 2e-37 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 125 / 5e-36 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 124 / 1e-35 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 124 / 2e-35 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.010G037800 [exp] 120 / 2e-33 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.019G133600 [exp] 115 / 6e-33 AT3G56380 183 / 2e-60 response regulator 17 (.1) Potri.002G082200 [exp] 115 / 8e-32 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10042938 pacid=23168369 polypeptide=Lus10042938 locus=Lus10042938.g ID=Lus10042938.BGIv1.0 annot-version=v1.0 ATGGCGGTCGCTGGTTCTGAATCACTGCGTTGGAGCTTGTCCGAGGAGGTTGGAATTTCGGGGTCTGGTGGAACTGTTTCAGAGGAGTTTCATGTTCTTG CAGTGGATGATAGTATTGTTGACCGCAAGTTAATCGAGCGCTTACTCAAGAGCTCTTCCTTTAAAGTGACGGCTGTGGAGAGTGGTAGTAGAGCTCTGCA GTACCTTGGATTGGACGGAGGGAAGAGTGCTGCTGGATTCAATGATTTGAAGGAATCATCGGCTTGTAAAGAGATACCGGTTGTAGTAATGTCGTCAGAG AACGTTTTGACCCGTATCCATAGTTGTCTGGAGGAAGGAGCAGAGGAATTCTTGATGAAGCCTGTGAAGAAGTCGGATGTTGCAAGGCTTAAAAACTTCA TAGAGAAGGGCGACCGTGCTGAGAAAACCCAGAGAAAGAGCCTGAAGAGGATGATTGAGGATGGCTTATTTACAACTACATTTTCTTGGTCAGAGGAGGA GGAGGAGCGATCCCCCTCGTCATCCCCATCACCATCACAATCATCATCTACATGTTCATCACCATCTTCAAAAAGGCCCAAGCAGCAATAG
AA sequence Show only first row Show all	>Lus10042938 pacid=23168369 polypeptide=Lus10042938 locus=Lus10042938.g ID=Lus10042938.BGIv1.0 annot-version=v1.0 MAVAGSESLRWSLSEEVGISGSGGTVSEEFHVLAVDDSIVDRKLIERLLKSSSFKVTAVESGSRALQYLGLDGGKSAAGFNDLKESSACKEIPVVVMSSE NVLTRIHSCLEEGAEEFLMKPVKKSDVARLKNFIEKGDRAEKTQRKSLKRMIEDGLFTTTFSWSEEEEERSPSSSPSPSQSSSTCSSPSSKRPKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19050		ARR7	response regulator 7 (.1)		Lus10042938 [exp]	0	1
AT2G23970			Class I glutamine amidotransfe...		Lus10033793 [exp]	4.6	0.7664
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	8.4	0.8033
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	25.1	0.7644
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	30.3	0.7171
AT3G06070			unknown protein		Lus10010508 [exp]	34.0	0.7463
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	36.3	0.7469
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	43.0	0.7032
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	44.6	0.7194
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	51.2	0.7287
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	51.9	0.6973

Compare expression of checked genes

Lus10042938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.