Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11410 48 / 1e-06 S-locus lectin protein kinase family protein (.1) AT4G00340 48 / 2e-06 RLK4 receptor-like protein kinase 4 (.1) AT4G21380 47 / 5e-06 ARK3 receptor kinase 3 (.1) AT1G11340 46 / 9e-06 S-locus lectin protein kinase family protein (.1) AT4G03230 43 / 9e-05 S-locus lectin protein kinase family protein (.1) AT4G27300 40 / 0.0006 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036639 [exp] 339 / 2e-112 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 156 / 3e-44 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 82 / 4e-18 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 74 / 2e-15 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 70 / 4e-14 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 62 / 4e-11 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031228 [exp] 52 / 4e-08 AT5G60900 161 / 2e-44 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 50 / 4e-07 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10013252 [exp] 45 / 2e-05 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059900 [exp] 270 / 2e-86 AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) Potri.013G060000 [exp] 186 / 4e-55 AT5G60900 400 / 3e-128 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 92 / 9e-22 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 80 / 1e-17 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 77 / 2e-16 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 76 / 4e-16 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 76 / 5e-16 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T084800 [exp] 74 / 1e-15 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 73 / 3e-15 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 73 / 3e-15 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain
Representative CDS sequence Show only first row Show all	>Lus10042939 pacid=23168171 polypeptide=Lus10042939 locus=Lus10042939.g ID=Lus10042939.BGIv1.0 annot-version=v1.0 ATGTATTTCTGGGTTTCTTCCCCGACTGACACAATCCTTCTAGGCCAAACCCTAGTCACCGGTCAGAAGCTCTTCTCCAATTCGAATGGAACGGTTGATT ACTCCGTCGGGAATTACATGCTGGAGCTTCAAACTGATGGCAACGTCGTCATGTCCGCCTACAAGTTCGCCGATCCAGGGTATTGGTTCACCTTAACCGC CGGGGATCCAAATGTGAGCATGGTTTTCAACCAAACAACAGGGTTTATCTACGTCAAGGACACCAACAGCAATTCAACTCTACACCAAATGACTTCCCAA ATCCCTAATCCAATTCAGGACTACTACCATCGAGCGACGATCAACGACATGGGAAACCTCCAGCAGTTCGTTTACAACAAGGGAAACGGCACATCCGGAT GGACGGTGGTTTGGGAGCCGGACTTCATTGCTAGGGAGCCTTGTCTCCCGTTTAACATATGCGGGGTGTGCGGATTCTGCACTTCCTCGAATAACAGAAG CGTCAATTGTGAATGCTTGCCTGGATACTCTCCCTGGATCCGGATGTGCCTTCAAAAGGTTGTTACCCGGATATGGTGA
AA sequence Show only first row Show all	>Lus10042939 pacid=23168171 polypeptide=Lus10042939 locus=Lus10042939.g ID=Lus10042939.BGIv1.0 annot-version=v1.0 MYFWVSSPTDTILLGQTLVTGQKLFSNSNGTVDYSVGNYMLELQTDGNVVMSAYKFADPGYWFTLTAGDPNVSMVFNQTTGFIYVKDTNSNSTLHQMTSQ IPNPIQDYYHRATINDMGNLQQFVYNKGNGTSGWTVVWEPDFIAREPCLPFNICGVCGFCTSSNNRSVNCECLPGYSPWIRMCLQKVVTRIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	0	1
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	4.2	0.9563
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	8.1	0.9474
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	8.2	0.9485
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	8.5	0.9415
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	8.8	0.9337
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	9.2	0.9414
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	9.5	0.9311
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	11.5	0.9369
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	13.0	0.9333
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	15.1	0.9407

Compare expression of checked genes

Lus10042939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.