Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 347 / 2e-107 RLK1 receptor-like protein kinase 1 (.1) AT2G19130 295 / 2e-87 S-locus lectin protein kinase family protein (.1) AT5G24080 244 / 5e-72 Protein kinase superfamily protein (.1) AT1G34300 246 / 1e-69 lectin protein kinase family protein (.1) AT4G00340 238 / 5e-67 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 234 / 2e-65 SD2-5 S-domain-2 5 (.1) AT1G61480 231 / 2e-64 S-locus lectin protein kinase family protein (.1) AT1G61440 230 / 4e-64 S-locus lectin protein kinase family protein (.1) AT3G25560 226 / 5e-64 NIK2 NSP-interacting kinase 2 (.1.2.3) AT4G11900 228 / 5e-63 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036639 [exp] 613 / 0 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 579 / 0 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 464 / 1e-151 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 461 / 2e-150 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 461 / 2e-150 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 428 / 1e-137 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 427 / 2e-137 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 381 / 9e-120 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 331 / 1e-104 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060000 [exp] 908 / 0 AT5G60900 400 / 3e-128 receptor-like protein kinase 1 (.1) Potri.013G059900 [exp] 696 / 0 AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) Potri.T085100 [exp] 485 / 1e-159 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 478 / 8e-157 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 476 / 4e-156 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 473 / 3e-155 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 471 / 3e-154 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 470 / 4e-154 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 469 / 1e-153 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 466 / 1e-152 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10042940 pacid=23168420 polypeptide=Lus10042940 locus=Lus10042940.g ID=Lus10042940.BGIv1.0 annot-version=v1.0 ATGACTAGAAAATTACCTACTGCTATCTTTTTCCTTCTTCTTCTTCTTCTAGTGTGTCTCAACTTCTCCTCTTCCAGAGCCCAAATAATCAGACCCAACA TCAGTCTAGGCACTGGAATCACTGCAGGTACCAACGACACATGGCGCTCTATCAACGGCGACTTCGCCTTTGGATTCTTCCCACTCGGCGGTGGCGGTGG CAACGACGTCCTCTACCTATTGGGTATCTGGTTCGACCGAACCCCCAAACCAACCTTGGTTTGGTCAGCCAACCGCGACTCTCCCGCCCCTGCCGGGTCA ACCATCCGGCTAACCTTCGCCGGCCAGTTCTTCCTGACATACGCCAACGGCAGCGTCCAACCAATATACACAGGGGAAGCAGCTGCTCTAGGGTTCATGC AAGACAACGGAAACATGGTCCTCAGAGATGGAAACTCCGAAGTCATGTGGGAGAGTTTCGGGCACCCGACCGACACGATCCTCCCTACCCAAACCCTAGC CAGTGGCGGGAAGCTGTTCTCCAATTCACGAGGAGAATCGGATTACTCAACTGGGCGGTTCATGCTGGAGATGCAGGTTAACGACGGGAACTTGGTGCTT TCCACTTATCATTTTTCTGATCCTGGATATTGGTACACGCTCAGGGGGTTTCCGATAAAAAATATGAGCTTGTTGTTCAATCAGACCGCTTCCTTGCAAC TCCTTAATGGCACTCACCACAATATCTACTCCCTCACCACAAACCAAATTCGGTATTATAGTGATTATTACCATCGAGTTACAATAGGAGACCAAGGAAA TCTGGAGCAATGGGCTCACCACAAGACAAACAATACTGGGTGGGTCAGCATTTGGAAGGCAATCCACGAACCCTGCACAGTCAACGGTATATGTGGACCC TACGGGATGTGCGTTTCACGCCGTAACGAAACGGCGACTTGTCAATGCATCCCCGGTTACATCCCTCGGGATCCTAATAACATCGCCCAAGGCTGTCGTC CTGAAACACTCATAAATTACTGCGGCGGCGGCGGCAACAACAACACAACAACGATGACGGATAATTTCACGGTAACGGTAATCGAAGACGCCGATTTCCC CTTTGAGGGGCCCGCGGATCTCACTCGAGTTAGGAACGTGGATTTGGAAGGTTGCCGAAGGGCCCTGATAGAGGATTGTTACAGCCACGCTGCTGCATTT GTGGTGGATTCTTCTTCTTCTAGGTGTATTATGAAACGAATGCCGTTGCTCAACGCCAGACTTACTTCTTCCACTAAAGGAACCAAGGCGCTGGTAAAAG TCCCCCTCAAGATTTCTATTGTTGCTACAAGTAATCCTGCTGTAAATGGGAAGAATAAGAGAAGCAAGTTCAATGTTGGACGTTTTCTATTGGTAGGTTT GATTTCCAGCGCCACACTTGCTCTGCTTTCTCTCTTCTCAGCGCTTTACTATCATCCTGCTGTGAGAAGACTTGTTAAAAGGAAGAGGATGAGAAGAAGT GGGAATGCGGTTGGGATCACTTTCACCAAGTTTACGTACGGGGAGCTTCAAGTGGCTACCAAAGGATTTAGCCACGTCATAGGCAGAGGTTCATCAGCCA CAGTCTACCTAGGGACCTTGCTATTCAATGATCTGCAGATTGATTTGGCGGTGAAACGATTAATGGAGACAGATATGGAGAAGAGCGACCAAGAGTTCGC CACGGAGTTGAAGGTCATAGGCAGGACACACCACAAGAACTTGGTCAGATTGTTGGGATTTTGCGTGGAAAACAATCAGCGGATTCTGGTTTACGAGCGA ATGTCGAATGGGAGCATATCGAGTGTCTTACAAGCCGGAGAAAAGCTGAGCTGGGATTTGAGAGCTCAGATTGTGATAGGAGTGGCGAGGGGATTACTGT ACCTCCACGATCAATGTGCCAAACAGATCATCCACTGCGACATCAAACCGGAAAACATCCTCCTGGACGATGACTACACGGCTAAAATTGCAGATTTCGG GCTGTCCAAACTGCTAAAGAAGGAGCAAACGAGGACGGAGACAAATGCTAGAGGAACGGCAGGGTACATAGCGCCAGAGTGGCTGAGGAATGCACCGATC ACATCAAAAGTTGATGTTTATAGTTTTGGAGTGGTGTTGTTGGAGATGATATGTTGTAGGAGGCACATTGAGTTGCATCGGGTTAGTGAAGAGAGTGAGG AGGAGGATCTAGTTCTAGGCGATTGGGTATTGAGTTGTGTGATGAATGGGAAGCTAGAAGCTGTGGTGAGTCATGATCCGGAGGTGGTGAGTGATATCAA GAGATTTGAGAGGATGGCGTTGGTGGGATTGTGGTGTATTCATCCGGAACCGTTTCTGAGGCCTTCCATGAAAAGAATCGTGCAGATGGTAGAGGGGACT GTTGATGTTGGTATTCCTCCTCAACTTTATGATAGAATGTCGTCATCTGAATGTCCCCATTCTCTTTAA
AA sequence Show only first row Show all	>Lus10042940 pacid=23168420 polypeptide=Lus10042940 locus=Lus10042940.g ID=Lus10042940.BGIv1.0 annot-version=v1.0 MTRKLPTAIFFLLLLLLVCLNFSSSRAQIIRPNISLGTGITAGTNDTWRSINGDFAFGFFPLGGGGGNDVLYLLGIWFDRTPKPTLVWSANRDSPAPAGS TIRLTFAGQFFLTYANGSVQPIYTGEAAALGFMQDNGNMVLRDGNSEVMWESFGHPTDTILPTQTLASGGKLFSNSRGESDYSTGRFMLEMQVNDGNLVL STYHFSDPGYWYTLRGFPIKNMSLLFNQTASLQLLNGTHHNIYSLTTNQIRYYSDYYHRVTIGDQGNLEQWAHHKTNNTGWVSIWKAIHEPCTVNGICGP YGMCVSRRNETATCQCIPGYIPRDPNNIAQGCRPETLINYCGGGGNNNTTTMTDNFTVTVIEDADFPFEGPADLTRVRNVDLEGCRRALIEDCYSHAAAF VVDSSSSRCIMKRMPLLNARLTSSTKGTKALVKVPLKISIVATSNPAVNGKNKRSKFNVGRFLLVGLISSATLALLSLFSALYYHPAVRRLVKRKRMRRS GNAVGITFTKFTYGELQVATKGFSHVIGRGSSATVYLGTLLFNDLQIDLAVKRLMETDMEKSDQEFATELKVIGRTHHKNLVRLLGFCVENNQRILVYER MSNGSISSVLQAGEKLSWDLRAQIVIGVARGLLYLHDQCAKQIIHCDIKPENILLDDDYTAKIADFGLSKLLKKEQTRTETNARGTAGYIAPEWLRNAPI TSKVDVYSFGVVLLEMICCRRHIELHRVSEESEEEDLVLGDWVLSCVMNGKLEAVVSHDPEVVSDIKRFERMALVGLWCIHPEPFLRPSMKRIVQMVEGT VDVGIPPQLYDRMSSSECPHSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10042940 [exp]	0	1
					Lus10031340 [exp]	2.8	0.8917
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10013148 [exp]	9.8	0.8345
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	11.7	0.8704
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	17.5	0.8664
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	24.4	0.7993
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	25.9	0.8302
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	27.9	0.7749
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	32.2	0.8492
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	32.2	0.8418
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	35.7	0.8245

Compare expression of checked genes

Lus10042940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.