Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74910 710 / 0 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 654 / 0 ADP-glucose pyrophosphorylase family protein (.1) AT2G39770 182 / 2e-53 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 179 / 3e-52 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 177 / 6e-52 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G34970 47 / 2e-05 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032440 [exp] 800 / 0 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10004699 [exp] 193 / 1e-57 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 193 / 1e-57 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 189 / 2e-56 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 122 / 2e-31 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 121 / 6e-31 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10015338 [exp] 94 / 3e-23 AT1G74910 95 / 5e-24 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10010879 [exp] 85 / 2e-19 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10018991 [exp] 48 / 1e-05 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070500 [exp] 755 / 0 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.012G075500 [exp] 738 / 0 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.010G198800 [exp] 187 / 1e-55 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 187 / 2e-55 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 186 / 4e-55 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 167 / 1e-47 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042942 pacid=23168379 polypeptide=Lus10042942 locus=Lus10042942.g ID=Lus10042942.BGIv1.0 annot-version=v1.0 ATGGGTATTTCTGAGGAAAGAGTTGTTGCTGTGATCATGGTCGGCGGACCTACAAAAGGAACACGATTCAGGCCATTGTCATTGAATATCCCAAAGCCTC TATTCCCTCTAGCAGGGCAGCCAATGGTTCACCATCCTATATCTGCTTGTAAAAAGATTCCAAATTTGGCTCAGATCTATCTTGTTGGTTTCTATGAAGA GCGTGAATTCGCATTGTATGTTTCTGCCATCTCTAATGAACTTAGAGTGCCTGTCAGATATCTGAGAGAGGATAAACCTCATGGTTCAGCTGGTGGACTT TATAACTTCAGAGATCTGATTATGGAAGATGATCCGACCCATATCTTCTTGCTAAATTGTGATGTTTGCTGCAGTTTCCCCCTCCCTGAAATGCTTGAGA CTCATAGACGATATGGGGGGATCGGAACTCTCCTTGTAATTAAGGTTTCTGCTGAGTCAGCCAGCCAGTTTGGCGAATTGGTAGCTGATCCAGACACCAA AGAATTATTGCATTATACGGAGAAACCTGAGACATTTGTCAGCGACTTGATAAATTGTGGTGTCTATGTGTTCACTCCAGAGATCTTTACAGCAATCCAA GGAGTTTCTTCTCAACTCAAAGATAGAGCTAATCTCAGACGTGTATCAAGCTTTGAAGCACTTCAGTCAGCTACAAGGAGTTTCCCCGCAGATTTTGTGA GGTTGGATCAGGACATTCTATCACCTCTTGCAGGAAAAAAGCAGTTGTACACATATGAAACCAGAGACTTCTGGGAACAAATAAAAACTCCGGGAATGTC TTTGAAATGCTCTTCTTTGTATCTTGCCCAATTCCGGTTCACTTCTCCTCATCTTTTGGCTAGTGGTGATGGTTCAAAGAGTGCCACTATTGTTGGTGAT GTTTATATTCATCCATCAGCGAAGGTTCATCCAACTGCTAAGCTAGGTCCGAATGTCTCGATATCCGCAAATGCTCGCATAGGAACAGGTGCAAGGCTTA TCAGTTGCATTATACTCGATGATGTTGAAGTCATGGAGAATGCAGTTGTGATTAATTCTATTGTTGGGTGGAAGTCTTCGATTGGAAAATGGTCTCGTGC TGAAGGAGTTTACAATGCAAAACTGGGAGTCACGATTCTCGGAGAAGCAGTTACCGTGGAAGATGAAGTAGTGGTGGTGAACTGCATTGTACTGCCACAC AAGACTCTGAATGTTAGTGTTCAGGAAGAGATCATCTTATAA
AA sequence Show only first row Show all	>Lus10042942 pacid=23168379 polypeptide=Lus10042942 locus=Lus10042942.g ID=Lus10042942.BGIv1.0 annot-version=v1.0 MGISEERVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKKIPNLAQIYLVGFYEEREFALYVSAISNELRVPVRYLREDKPHGSAGGL YNFRDLIMEDDPTHIFLLNCDVCCSFPLPEMLETHRRYGGIGTLLVIKVSAESASQFGELVADPDTKELLHYTEKPETFVSDLINCGVYVFTPEIFTAIQ GVSSQLKDRANLRRVSSFEALQSATRSFPADFVRLDQDILSPLAGKKQLYTYETRDFWEQIKTPGMSLKCSSLYLAQFRFTSPHLLASGDGSKSATIVGD VYIHPSAKVHPTAKLGPNVSISANARIGTGARLISCIILDDVEVMENAVVINSIVGWKSSIGKWSRAEGVYNAKLGVTILGEAVTVEDEVVVVNCIVLPH KTLNVSVQEEIIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10042942 [exp]	0	1
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	1.4	0.8660
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	3.9	0.7990
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	4.5	0.7516
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	6.3	0.8091
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10014845 [exp]	11.0	0.7185
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	14.1	0.7781
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	18.9	0.7614
					Lus10032784 [exp]	20.2	0.6709
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	21.0	0.7509
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	22.2	0.7406

Compare expression of checked genes

Lus10042942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.