Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 887 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 858 / 0 nucleotide binding (.1.2) AT5G52820 78 / 4e-15 WD-40 repeat family protein / notchless protein, putative (.1) AT4G02730 65 / 3e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 66 / 5e-11 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G34460 63 / 2e-10 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT3G49660 62 / 3e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 59 / 1e-08 Coatomer, beta' subunit (.1.2.3.4.5) AT1G73720 58 / 1e-08 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT2G43770 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032444 [exp] 1212 / 0 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10027252 [exp] 907 / 0 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 901 / 0 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10029493 [exp] 73 / 3e-13 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 72 / 5e-13 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 65 / 4e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023579 [exp] 65 / 5e-11 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10014674 [exp] 64 / 7e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040464 [exp] 63 / 4e-10 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041200 [exp] 921 / 0 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G049200 [exp] 917 / 0 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 73 / 2e-13 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.009G115300 [exp] 64 / 9e-11 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.019G087200 [exp] 63 / 2e-10 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 62 / 4e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G153700 [exp] 62 / 5e-10 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.006G045800 [exp] 60 / 4e-09 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 59 / 4e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 58 / 1e-08 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042944 pacid=23168056 polypeptide=Lus10042944 locus=Lus10042944.g ID=Lus10042944.BGIv1.0 annot-version=v1.0 ATGGCAGAACTCATAGAAAGCTACGCATCCGTCCCGTCCACGGAGCGAGGCCGAGGAATTCTAATCTCCGGCGACGCCAAATCCAACTCCATCCTCTACA CAAATGGACGGTCCGTCATCATCCGCTACCTCGACAAGCCTCTCAAGGTCGAGGTCTACGGCGAACACGGCTACCCCGTTACGGTCGCTCGTTATTCTCC TAACGGAGAGTGGATCGCATCCGCCGATACCTCTGGAACCGTCAGGATCTGGGGCGTGCACAACAACTTCGTCCTCCACAACGAATTCCGTGTCCTATCT GGCCGAATCGACGATCTGCAATGGTCTCCTGATATGCTGAGGATCGTCGTCTCCGGCGACGGGAAGGGAAAGTCGTTTGTACGGGCATTCATGTGGGATT CTGGAAGCACAGTGGGGGATTTCGACGGACATTCGAAGAGAGTGTTGAGTTGTGCGTTTAAACCAACACGCCCATTCCGCATTGTGAGTTGTGGAGAAGA TTTTGTTGTTAACTTCTATGAAGGCCCTCCGTTTAAGTTCCTGCTATCTCAAAGGCTGCACACCAACTTTGTGAACTGCGTTAGATTTTCACCAGATGGC AGCAAGTGCATTACTGTAAGCTCTGATAAGAAAGGGCTAATCTACAATGGGAAGACTGGTGAAATGATTGGAGAGTTGTCCCAAGAAAGTGCTCACACCG GCACCATATATGCTGTTAGTTGGAGTCCTGATAGTAAGCGGATACTTACTGCTTCAGCTGATAAGTCTGCCAAGGTATGGGAAATTTCCGAGGATGGAAA TGGGACAGTGGTAAAGACGTTAACATGTCCTGGTTCTGGTGGAGTTGAAGATATGCTGGTTGGATGCCTTTGGCTAAATGAACACCTTATTGTTGTTTCC CTTAGCGGAGCAATTAGCCTATTCTCTGCCAGTGATCTTGAGAAAGCCCCCATCGTACTATCGGGACATATGAAAAATGTCACGGCGTTAACCCTGCTTG GAAATGAGGAAAAGACGATTGTCACTAGCAGCTATGACGGACACATCATCAAATGGAATCAGGGTGTTGGTTATGCTGGGAAGCTAGAGAGGGGAAACAG TTCTCAGATCAAGTGTCTGGCAGCTACTAAAGACGAGATCATGACATCTGGATTTGACAACAAGGTGCAAAGGATGAGTCTACAAGGGAATGAATGCGGA AAATTGGAGGATGTCGATATCGGTAGCCAGCCTCAGGACTTATGCCTCGCGATAAACAGGCCTGGGCTAGCCTTGGTTGCAACTGAATCGGCTGCTGTGT TGATGGAGGGGTTAAAAGTAGTGTCCAGTACAAAGTTGGACTTTGTTGCCACAGCATGCGCCATAAAACCTGACGGGAGTGAAGCCATTGTGGGTGCACA AGACGGGAAGTTGCACATATACTCTGTCTCGGGGTATAACCTTACGGAAGAAGCAGTACTTGAGAAGCATAGGGGTGCTATCAATGTCATACGCTATTCT CCAGATGTCACCATGTTTGCTTCTGCAGATTTGAACCGGGAAGCTGTTGTTTGGGATGGTTCATCCAGAGAGATTAAGCTTAACAACATGCTATTCCACA CGGCTCGAATCAACTGCCTTGCTTGGTCTCCGAGTAGCACATTTGTGGCAACTGGGTCTCTAGACACATGTGTCATCATATATGAAATCGGGAAGCCGGT TTCGAACCGGATCACCGTAAAACTAGCTCATCTAGGCGGAGTGTACGGTCTGGCTTTTACTGATGATTCCACGGTTGTCAGCTCGGGGGAGGATGCTTTT GTACGTGTATGGAGGGTGACTTCTTCTGAATGA
AA sequence Show only first row Show all	>Lus10042944 pacid=23168056 polypeptide=Lus10042944 locus=Lus10042944.g ID=Lus10042944.BGIv1.0 annot-version=v1.0 MAELIESYASVPSTERGRGILISGDAKSNSILYTNGRSVIIRYLDKPLKVEVYGEHGYPVTVARYSPNGEWIASADTSGTVRIWGVHNNFVLHNEFRVLS GRIDDLQWSPDMLRIVVSGDGKGKSFVRAFMWDSGSTVGDFDGHSKRVLSCAFKPTRPFRIVSCGEDFVVNFYEGPPFKFLLSQRLHTNFVNCVRFSPDG SKCITVSSDKKGLIYNGKTGEMIGELSQESAHTGTIYAVSWSPDSKRILTASADKSAKVWEISEDGNGTVVKTLTCPGSGGVEDMLVGCLWLNEHLIVVS LSGAISLFSASDLEKAPIVLSGHMKNVTALTLLGNEEKTIVTSSYDGHIIKWNQGVGYAGKLERGNSSQIKCLAATKDEIMTSGFDNKVQRMSLQGNECG KLEDVDIGSQPQDLCLAINRPGLALVATESAAVLMEGLKVVSSTKLDFVATACAIKPDGSEAIVGAQDGKLHIYSVSGYNLTEEAVLEKHRGAINVIRYS PDVTMFASADLNREAVVWDGSSREIKLNNMLFHTARINCLAWSPSSTFVATGSLDTCVIIYEIGKPVSNRITVKLAHLGGVYGLAFTDDSTVVSSGEDAF VRVWRVTSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	0	1
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	5.4	0.8096
AT5G49170			unknown protein		Lus10022872 [exp]	11.1	0.8039
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	16.5	0.7984
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	22.3	0.6574
AT2G40435			unknown protein		Lus10025257 [exp]	25.9	0.7419
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	26.5	0.7978
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	28.0	0.7088
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	36.9	0.7578
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	37.9	0.7692
AT5G66840			SAP domain-containing protein ...		Lus10008134 [exp]	38.5	0.7770

Compare expression of checked genes

Lus10042944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.