Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26618 780 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT1G12920 762 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT5G47880 745 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032447 [exp] 826 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10025863 [exp] 750 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 750 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 749 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 747 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 746 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 729 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 172 / 2e-50 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2) Lus10028313 [exp] 145 / 1e-41 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141000 [exp] 787 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.003G159000 [exp] 779 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 775 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10042947 pacid=23168329 polypeptide=Lus10042947 locus=Lus10042947.g ID=Lus10042947.BGIv1.0 annot-version=v1.0 ATGGCAGATCAGGAATCAGACAAGAACATTGAGATATGGAAAATCAAAAAGTTGATCAAGGCATTGGAAGCCGCAAGGGGAAATGGTACAAGCATGATAT CCCTTATAATGCCTCCTCGTGATCAGATATCTCGTGTTACTAAGATGTTGGGAGATGAGTTTGGAACAGCTTCAAACATCAAAAGTAGGGTTAATCGTCA ATCTGTTCTGGGGGCTATCACATCTGCTCAACAAAGGCTGAAGCTCTACAATAAGGTGCCACCCAATGGTTTGGTACTTTACACCGGCACTATTGTTACA GATGATGGGAAGGAAAAGAAGGTGACGATCGATTTTGAGCCGTTTAAGCCTATCAATGCATCTTTATACTTATGTGACAACAAGTTCCACACAGAAGCTT TGAACGAACTCTTGGAATCTGATGATAAGTTTGGTTTCATAGTCATGGATGGAAATGGTACTCTGTTCGGAACGTTGAGTGGCAATACGCGAGAGGTGCT GCATAAATTTTCTGTTGATTTGCCCAAAAAGCACGGAAGAGGTGGGCAGTCTGCTCTTCGTTTCGCTCGTCTTCGGATGGAGAAGAGACATAACTACGTT AGGAAGACTGCCGAGCTTGCTACACAGTTCTACATCAATCCTGCTACCAGTCAGCCAAATGTATCTGGTCTGATTCTGGCTGGTTCGGCCGATTTCAAGA CCGAGCTTAGTCAGTCGGATATGTTTGATCCTCGCTTGCAGGCCAAGATACTGAACGTGGTTGATGTGTCGTATGGAGGTGAAAATGGGTTTAACCAGGC GATTGAGCTGTCGGCTGAGATACTATCAAACGTGAAGTTCATACAAGAAAAAAAATTGATAGGAAAATACTTCGAGGAGATCAGCCAGGACACTGGAAAG TATGTGTTTGGAGTTGAGGACACGCTGAAGGCATTGGAAATGGGTGCTGTGGAGACTCTCATTGTGTGGGAAAATCTGGATATCAATCGTTATGTGTTGA AAAACAGTGTTAATGGGGAGACGGTGATAAAGCACTTGAACAAGGAGCAAGAAGGTGATCAGAGTAACTTCAGAGATGGTGCAACCTCTGGGGAGCTGGA AGTTGAGGAGAAGCTGCCATTACTGGAGTGGTTTGCGAATGAGTACAAGAAGTTTGGGTGCACGTTGGAGTTTGTCACAAACAAATCCCAGGAGGGGTCG CAGTTTTGTAGAGGGTTTGGTGGGATTGGAGGTATTCTTCGTTATCAACTGGACATGAGAACTTTTGATGAGCTGTCCGATGATGGAGAAGTTTATGACG ACTCTGATTAG
AA sequence Show only first row Show all	>Lus10042947 pacid=23168329 polypeptide=Lus10042947 locus=Lus10042947.g ID=Lus10042947.BGIv1.0 annot-version=v1.0 MADQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYV RKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGK YVFGVEDTLKALEMGAVETLIVWENLDINRYVLKNSVNGETVIKHLNKEQEGDQSNFRDGATSGELEVEEKLPLLEWFANEYKKFGCTLEFVTNKSQEGS QFCRGFGGIGGILRYQLDMRTFDELSDDGEVYDDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	3.2	0.8814
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	4.9	0.8801
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	6.0	0.9104
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	8.4	0.8459
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	8.5	0.9097
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	8.9	0.9021
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	9.7	0.8985
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	10.5	0.9037
AT3G13130			unknown protein		Lus10038793 [exp]	14.7	0.8840
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	15.9	0.8961

Compare expression of checked genes

Lus10042947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.