Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71080 226 / 1e-71 RNA polymerase II transcription elongation factor (.1) AT5G38050 162 / 2e-47 RNA polymerase II transcription elongation factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032448 [exp] 449 / 5e-159 AT1G71080 280 / 5e-93 RNA polymerase II transcription elongation factor (.1) Lus10004071 [exp] 180 / 3e-56 AT1G71080 177 / 9e-56 RNA polymerase II transcription elongation factor (.1) Lus10009106 [exp] 179 / 1e-53 AT5G38050 196 / 4e-61 RNA polymerase II transcription elongation factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114900 [exp] 252 / 7e-82 AT1G71080 286 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.008G127900 [exp] 242 / 4e-78 AT1G71080 285 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.004G092200 [exp] 194 / 4e-59 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09816 [flax] [poplar] EAF RNA polymerase II transcription elongation factor
Representative CDS sequence Show only first row Show all	>Lus10042948 pacid=23168403 polypeptide=Lus10042948 locus=Lus10042948.g ID=Lus10042948.BGIv1.0 annot-version=v1.0 ATGGCGAACAATGTCAAGGAAGAGCCCAAGACCGCACCCCAGCCTGATCGCTGGTACGATATCACCCTCGGATCTTCATTCAAAGAAGACGCTTCCAACA AGTTCCGTACTCTGCGATATGAATTCAAGCCGGCCTCAATTGACAAGTCAAAGCCAGGCTCGTTGCACAAGAACAAGGAAAATCGGGTGTCTGTGGAGTT TCAGAACAATCAACCTGGGAAACCCAAAGTTACATTTGAAGGAAGCAGCGAGGATTACAAAGAAAACGACGCCGTGTTGTTCTTTGACGGCCGCACTTTC CGACTGGAGAAGCTTCACAGAGCTGTCAACAAGCTCCGTCACCTTAGACAGCCCGGCGAGTCTTCTGCTGCTGCAGCCGCTGCTGTTGCTGCTGCCGTCG CACAATCTGGGGACCCTCGTTTGTCTCCTCCAGTTGGGAAGGGCGTCAAATCAGCTCAAATTGGGAAGCCCATATCATTTCCTTCTATTCCCGTTGAGGT GGAGCGAATTGATGTCGAGAAGCCACCAATTCATGATGTTTCCCTGCCTTTTCTTGAAGCTCCGACAACTCACTCATCAACTTCCTTTTATACTCCTCTT ATTACAGCTCCTAGAATTGCTGGGAAGGGGTACAACGATATTAGGACTGAGCCACCGAAAGTTCCAGCTCCATTAAGCCCCAACGATGACGATGACGATG AAGACAAAGAACACCATGACATAGATATCGAAGACATTTTTGGTTCCATTTCCCCTGCCGATGAAGGCACGCCATCAGAAAACAAAGATATCGATATGAG CCATGACAATGATACTCAACAACGTCAGAATGAGTCGGATGACGAGATTGCCGACGTGGATGATGATAGCGGGGATGAAGAACATAAAGGCAGAAATGCG GCGGAAGCACTTAAAGCGCAGGTCAACAATGGCGACGAAGGTCACAATGACAAGTCAAAGGAGGGTGATGATCAGTCTTCTAGTTCAGGAAGCAGCAGTA GCGGAAGCAGCAGTAGTGGGAGTGCAAGTGGAAGCGGAAGCAATAGCAGCAGCGACAATGAAGGGAGCGATGACTCTGTCAACTCCATTTGA
AA sequence Show only first row Show all	>Lus10042948 pacid=23168403 polypeptide=Lus10042948 locus=Lus10042948.g ID=Lus10042948.BGIv1.0 annot-version=v1.0 MANNVKEEPKTAPQPDRWYDITLGSSFKEDASNKFRTLRYEFKPASIDKSKPGSLHKNKENRVSVEFQNNQPGKPKVTFEGSSEDYKENDAVLFFDGRTF RLEKLHRAVNKLRHLRQPGESSAAAAAAVAAAVAQSGDPRLSPPVGKGVKSAQIGKPISFPSIPVEVERIDVEKPPIHDVSLPFLEAPTTHSSTSFYTPL ITAPRIAGKGYNDIRTEPPKVPAPLSPNDDDDDEDKEHHDIDIEDIFGSISPADEGTPSENKDIDMSHDNDTQQRQNESDDEIADVDDDSGDEEHKGRNA AEALKAQVNNGDEGHNDKSKEGDDQSSSSGSSSSGSSSSGSASGSGSNSSSDNEGSDDSVNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	0	1
AT3G15395			unknown protein		Lus10027849 [exp]	3.5	0.7709
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10017291 [exp]	6.2	0.7714
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	8.2	0.7108
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	9.2	0.7673
AT5G04000			unknown protein		Lus10018038 [exp]	12.4	0.7698
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	12.5	0.7320
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	14.1	0.7864
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	14.6	0.7871
AT5G01260			Carbohydrate-binding-like fold...		Lus10018226 [exp]	22.7	0.6586
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10019227 [exp]	31.1	0.7445

Compare expression of checked genes

Lus10042948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.