Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01320 1021 / 0 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G25620 300 / 3e-91 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 282 / 7e-85 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G21090 280 / 8e-84 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT4G27420 276 / 2e-82 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 276 / 1e-81 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G51500 273 / 4e-81 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G71960 265 / 2e-78 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 265 / 3e-77 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G55100 262 / 4e-77 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032449 [exp] 1272 / 0 AT2G01320 1037 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Lus10035692 [exp] 298 / 5e-91 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 293 / 7e-89 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 283 / 4e-85 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 276 / 3e-83 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10027354 [exp] 277 / 2e-82 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 273 / 1e-80 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10025596 [exp] 271 / 1e-80 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10028704 [exp] 269 / 1e-79 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115000 [exp] 1073 / 0 AT2G01320 1047 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Potri.013G111900 [exp] 291 / 5e-88 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 290 / 2e-87 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.004G236500 [exp] 284 / 2e-85 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 282 / 2e-84 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.003G046800 [exp] 277 / 6e-83 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 273 / 6e-82 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 275 / 8e-82 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 276 / 1e-81 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.009G051200 [exp] 271 / 4e-80 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10042949 pacid=23168354 polypeptide=Lus10042949 locus=Lus10042949.g ID=Lus10042949.BGIv1.0 annot-version=v1.0 ATGGCAGGGCAAGTGCTGCGTTTCGGCGGGAATGGGCTCGGCCAGATTGTCACTGCAGCGGCCGTGGCTCTCCTGCTCCGGTTGTTTTCCGGACCTGGCC CTGCTCTTCCACCTGATTCGGAGTTCGATACCGATGATATAGAGAAAGATGACGGCGACGACTACGATGAAAACGGCGGCCATGCTCCAGCTAACGGCGA GGTCGTTCCGGTTACTATACGCTGGCACAATATCAACTGTTCCCTCCTTGACAAGCGCTCCGAATTCGTAAGGTTTCTGCTGAATAATGTTAGCGGAGAG GCCAAGCCTGGAAGATTGCTTGCAATAATGGGACCATCTGGTTCTGGAAAAACGACGTTGCTCAATGTTTTGGCTGGACAACTGATGGAATCCCCACGTT TGAATTTATCTGGGCTTTTGGAGATTAATGGGAAGCCATTCTCAAACCGAGCTTATAAGCTCGCATATGTGAGGCAGGAGGATCTCTTCTTTTCTCAGCT AACAGTTAGGGAGACACTTTCTCTGGCCGCAGAGCTTCAACTTCATCATATATCTTCTGTAGAAGAAAGAGATGAATATGTGAACAGTTTGTTGTTCAAG CTTGGTTTGGTTAATTGTGCTGATTCAATTGTTGGAGATGCAAAAGTTCGTGGGATAAGTGGTGGTGAAAAAAAGCGTTTGTCAGTCGCTTGTGAACTTA TAGCAAGTCCTTCTGTTGTATTTGCTGATGAACCCACTACAGGTCTGGATGCATTCCAGGCAGAGAAAGTTATGGAAACTCTACGCCAGTTGGCTCAGGA TGGACACACAGTAATTTGCTCCATACACCAACCTAGGGGTTCGGTGTACAATAAATTTGACGACATCGTGTTGCTGTCAGAGGGTACCTTAGTTTATGCT GGCCCTGCTGGTGATCAGCCATTGACATATCTATCAAAGTTCGGGTTTAAATGTCCAGAACATGTCAATCCTGCAGAATTTTTGGCCGATCTCGTTTCAG TTGATTACAGCTCTGCTGAAAGTGTGTCCTCTTCTCGGAAAAGGATAGATGGTCTCGTTGAGTCATTTGCAGAGCAGTCATCCTTGATCCTGTATGCAAC TCCACTTAATAAAAGTATTGGAATGGTGAATGAGAGGAAATTGAAAAAAAGACTTGCTGTGAAAGGAAAAGGGAACTGGTGGAAACAATTTCAGTTACTT CTTAGACGTGCATGGATGCAGGCTTCACGTGATGGGCCTACAAACAAAGTACGTTCAAGAATGTCTATCGCGTCAGCTATCATATTTGGCTCAGTTTTCT GGAGAATTGGTAGATCCCAGACATCAATACAAGATCGGATGGGATTGCTTCAGGTTGCGGCCATAAACACAGCCATGGCAGCTCTCACCAAAACTGTTGG TGTGTTCCCCAAGGAACGAGCTATAGTAGACAGGGAGCGTGCTAAGGGATCTTATGCTTTGGGACCTTATTTGCTTTCTAAATTGATTGCTGAGATTCCA GTTAGTGCAGCATTTCCTCTGATGTTTGGTGCTGTACTTTATCCCATGTCCGGTTTGCATCCAGCTCTGTCTAGGTTCGGGAAGTTCTGCGGAATAGTAA CGGCAGAATCATTTGCTGCATCTGCAATGGGTCTAACTGTGGGAGCCATGGTTCCAAGCACTGAAGCAGCAATGGCTGTGGGACCGTCTCTCATGACGGT TTTCATAGTCTTCGGTGGCTATTATGTGAATGCAGACAATACACCAATTATATTCCGGTGGATTCCTCGTGCATCACTGATAAGATGGGCCTTCCAAGGG CTTTGTATCAATGAATTCGGAGGTCTTCGCTTCGACCATCAAAATTCGTTTGATATTGAAACTGGCGAGCAGGCTCTGGATCGTCTATCCTTTGGAGAAA GTGGCATCAGTGATACAGTGATGGCACAGAGCAGAATTCTGTTGTTCTGGTATTGCGCAACCTACTTTCTGTTGCAGAAAAATAAACCCAAATACCAGCG GCTGGCTTCATCAGAACAAACTAAAACAAAGCTGGAGCTGGAGCCACTAGAGACTGACCAAATTAAACAGCTAATTCAGGAACCTGATCAAACTCCGGCT AGTAAAGTGGAACCAGCTGAACCGGTTGATAATCCGTCGCAATTTGACCAATTCCAACCGTTTGTCTTGGAAGCAAGGGTTACAGGAGCAAAACCGATAC AACAGAAATCCACTTGCACTGTTCACTTAATCTCAGCCAGCCTCAATATCTCAACACAAATACACATCTCAGCACAGCCTTGA
AA sequence Show only first row Show all	>Lus10042949 pacid=23168354 polypeptide=Lus10042949 locus=Lus10042949.g ID=Lus10042949.BGIv1.0 annot-version=v1.0 MAGQVLRFGGNGLGQIVTAAAVALLLRLFSGPGPALPPDSEFDTDDIEKDDGDDYDENGGHAPANGEVVPVTIRWHNINCSLLDKRSEFVRFLLNNVSGE AKPGRLLAIMGPSGSGKTTLLNVLAGQLMESPRLNLSGLLEINGKPFSNRAYKLAYVRQEDLFFSQLTVRETLSLAAELQLHHISSVEERDEYVNSLLFK LGLVNCADSIVGDAKVRGISGGEKKRLSVACELIASPSVVFADEPTTGLDAFQAEKVMETLRQLAQDGHTVICSIHQPRGSVYNKFDDIVLLSEGTLVYA GPAGDQPLTYLSKFGFKCPEHVNPAEFLADLVSVDYSSAESVSSSRKRIDGLVESFAEQSSLILYATPLNKSIGMVNERKLKKRLAVKGKGNWWKQFQLL LRRAWMQASRDGPTNKVRSRMSIASAIIFGSVFWRIGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIP VSAAFPLMFGAVLYPMSGLHPALSRFGKFCGIVTAESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASLIRWAFQG LCINEFGGLRFDHQNSFDIETGEQALDRLSFGESGISDTVMAQSRILLFWYCATYFLLQKNKPKYQRLASSEQTKTKLELEPLETDQIKQLIQEPDQTPA SKVEPAEPVDNPSQFDQFQPFVLEARVTGAKPIQQKSTCTVHLISASLNISTQIHISAQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	2.4	0.8849
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	4.0	0.8427
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	4.5	0.8748
AT2G46550			unknown protein		Lus10030237 [exp]	4.9	0.8311
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	5.2	0.8671
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	5.5	0.8654
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	5.8	0.7937
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	6.6	0.8661
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	8.8	0.8645
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	9.5	0.8583

Compare expression of checked genes

Lus10042949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.