Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49000 62 / 1e-11 unknown protein AT3G18560 54 / 1e-08 unknown protein AT1G71740 39 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032453 [exp] 332 / 2e-115 AT1G49000 70 / 1e-14 unknown protein Lus10034266 [exp] 56 / 2e-09 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 56 / 2e-09 AT1G71740 51 / 2e-08 unknown protein Lus10029742 [exp] 39 / 0.001 AT1G71740 82 / 5e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059500 [exp] 96 / 4e-24 AT1G49000 111 / 1e-31 unknown protein Potri.010G130600 [exp] 58 / 4e-10 AT1G49000 77 / 2e-18 unknown protein Potri.004G088300 [exp] 48 / 6e-07 AT1G49000 50 / 4e-08 unknown protein Potri.017G128700 [exp] 42 / 7e-05 AT3G18560 48 / 3e-07 unknown protein Potri.011G103500 [exp] 41 / 0.0003 AT3G14760 121 / 6e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042953 pacid=23168065 polypeptide=Lus10042953 locus=Lus10042953.g ID=Lus10042953.BGIv1.0 annot-version=v1.0 ATGGATTTATCAACCACCAGTCATCCCGAATCAACGCCGGAGTCTCCCACCGACGGCTGTGGCTCGTTGAAGCGGCTGACAATCGGCCTTCCGCTGTCCA TATCATCCCTCGTGGCTCACTGTTCGAGACCCAAACCAGCCGTACCACCACCTCCTCGTCCAAGTACTCCAGCGAGGCATCTGCAACTCCACCTTTACTT AAACGGAGACTCCCCTCTCGTCCGCCGCTCCAAGCGCCTCCTCACCCAAATCCGCACCAAGACTACTAACAGCAACAATAATGGTCAAAGAGAGTTAGAA AAAGTAATTTCTCCAAGGAGGTTGGTGCGTCAATCGAAGCAGCTAGTCAGGCAAATCAGCAACAAGGCAATCAACTTGGCCAACGGCAACAAGAATAACC GCACGTCCACGTCACCACCAGTCGGAAAACTAGACATCGTCGCCGTGCCGGATGTGGACGGAAGGGGAAGCTGTACTACAAGGTCTCCGATGAGGTCGCC GCCGTTGATGCTACGCCAGTCCAAAAAGATTCTGACGCAGATCGGAAATAAGGCGGTCGGTTTGGTTCACCGGAGCAAGAGTGGCAAAGACGGGAGATCG TCGTCGGAGATGGAGGATGAGTTCGGGGACGGAGGGGTGTGGCAGAGGTCGATTTTGCTGGGGGATAAGTGCCAGCCGCTGGCTTTCTCCGGCGTCATTT ATTACAACAGCCGCGGCAAGCGCATGAATAACGATGGTCGGCAGTTGGCACTCCGTGATAGCCCGTTTCAACATGCCTGCCCTACCTGCGGGAAATGA
AA sequence Show only first row Show all	>Lus10042953 pacid=23168065 polypeptide=Lus10042953 locus=Lus10042953.g ID=Lus10042953.BGIv1.0 annot-version=v1.0 MDLSTTSHPESTPESPTDGCGSLKRLTIGLPLSISSLVAHCSRPKPAVPPPPRPSTPARHLQLHLYLNGDSPLVRRSKRLLTQIRTKTTNSNNNGQRELE KVISPRRLVRQSKQLVRQISNKAINLANGNKNNRTSTSPPVGKLDIVAVPDVDGRGSCTTRSPMRSPPLMLRQSKKILTQIGNKAVGLVHRSKSGKDGRS SSEMEDEFGDGGVWQRSILLGDKCQPLAFSGVIYYNSRGKRMNNDGRQLALRDSPFQHACPTCGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49000			unknown protein		Lus10042953 [exp]	0	1
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	1.7	0.9064
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	4.9	0.8487
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	4.9	0.8768
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	7.7	0.8292
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	9.8	0.8255
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	10.8	0.8928
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	13.9	0.8332
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	16.5	0.8623
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	17.0	0.8555
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	17.5	0.8453

Compare expression of checked genes

Lus10042953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.