Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18570 119 / 2e-34 Oleosin family protein (.1) AT1G48990 98 / 6e-26 Oleosin family protein (.1) AT2G25890 71 / 1e-15 Oleosin family protein (.1) AT4G25140 67 / 4e-14 OLE1, OLEO1 oleosin 1 (.1) AT3G27660 53 / 6e-09 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G51210 52 / 6e-09 OLEO3 oleosin3 (.1) AT5G40420 53 / 7e-09 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G01570 47 / 8e-07 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032461 [exp] 297 / 3e-104 AT3G18570 142 / 1e-43 Oleosin family protein (.1) Lus10017992 [exp] 152 / 3e-47 AT3G18570 136 / 4e-41 Oleosin family protein (.1) Lus10041987 [exp] 147 / 5e-45 AT3G18570 129 / 2e-38 Oleosin family protein (.1) Lus10027161 [exp] 79 / 8e-19 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10039683 [exp] 77 / 6e-18 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10031387 [exp] 74 / 5e-17 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10010943 [exp] 76 / 4e-16 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017460 [exp] 72 / 6e-16 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 70 / 2e-15 AT4G25140 146 / 3e-46 oleosin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059400 [exp] 135 / 8e-41 AT3G18570 113 / 4e-32 Oleosin family protein (.1) Potri.006G234900 [exp] 89 / 8e-23 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.018G057800 [exp] 76 / 9e-18 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.001G080000 [exp] 73 / 7e-17 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.003G150600 [exp] 66 / 5e-14 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.015G081901 [exp] 53 / 5e-09 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.T125308 [exp] 53 / 5e-09 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.012G083400 [exp] 49 / 2e-07 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.017G071800 [exp] 45 / 5e-06 AT3G01570 130 / 4e-39 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10042957 pacid=23168023 polypeptide=Lus10042957 locus=Lus10042957.g ID=Lus10042957.BGIv1.0 annot-version=v1.0 ATGGCCGGCGAGTACAACGGGACAGGCGTCCCAAGGCCAACGAGACCAATCGCCGTCGTCGAAGCTGACAAAGACAACAGCAAAAGCACAACAACGACGA CGACAACATTCCTCCGGAAAGCACAAAGCAGCTGGCGACAACACTACAACCCGCCGATTACGTCGACTCAGCTGGTGGGCCTTTTGACCCTCTTACTATC GGGCACTATTCTGATCGTCTTCACGGGCCTGATAATCACAATGGCTATTCTCACCCTCATCTTCTTCGGTCCACTTCTGATCTTATCCAGCCCAATATGG ATCCCTGTCGGCACGCTTCTCTTTGTCCTCGTCTCTGGCTTTCTAACGCTCTGCGGATGCTTCGTGGCGTTCGTCGCCGGTTTGGCGTGGACGTATAGGT ATTTCAAAGGGATGAACCCGCCCGGATCGGATCAGGTGGATTACGCCCGGATCCGGATCTACGACACCGCTACCCATGTCAAGGATTGTGCCAAAGAATA TGGTGGGTACCTGCAGAGCAAGGCCAAGGATGCCGCTCCTGGAGCGTAG
AA sequence Show only first row Show all	>Lus10042957 pacid=23168023 polypeptide=Lus10042957 locus=Lus10042957.g ID=Lus10042957.BGIv1.0 annot-version=v1.0 MAGEYNGTGVPRPTRPIAVVEADKDNSKSTTTTTTTFLRKAQSSWRQHYNPPITSTQLVGLLTLLLSGTILIVFTGLIITMAILTLIFFGPLLILSSPIW IPVGTLLFVLVSGFLTLCGCFVAFVAGLAWTYRYFKGMNPPGSDQVDYARIRIYDTATHVKDCAKEYGGYLQSKAKDAAPGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18570			Oleosin family protein (.1)		Lus10042957 [exp]	0	1
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	2.4	0.7530
AT2G31420	B3		Domain of unknown function (DU...		Lus10027287 [exp]	14.8	0.6591
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	26.3	0.6668
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	66.5	0.6933
AT1G74860			unknown protein		Lus10033128 [exp]	133.4	0.6379
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	171.0	0.6109
					Lus10011637 [exp]	185.0	0.6109
AT3G12000			S-locus related protein SLR1, ...		Lus10003420 [exp]	195.1	0.6172
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	196.8	0.6199
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	212.2	0.6263

Compare expression of checked genes

Lus10042957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.