Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31814 214 / 5e-63 FRL2 FRIGIDA like 2 (.1) AT5G16320 203 / 6e-59 FRL1 FRIGIDA like 1 (.1) AT5G48385 165 / 4e-44 FRIGIDA-like protein (.1) AT3G22440 135 / 4e-34 FRIGIDA-like protein (.1) AT4G14900 115 / 3e-27 FRIGIDA-like protein (.1) AT5G27230 100 / 6e-22 Frigida-like protein (.1) AT5G27220 70 / 3e-12 Frigida-like protein (.1) AT4G00650 60 / 2e-09 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032466 [exp] 848 / 0 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10002146 [exp] 172 / 8e-47 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 169 / 9e-46 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10010560 [exp] 128 / 1e-31 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10033828 [exp] 128 / 9e-31 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10006113 [exp] 124 / 4e-30 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10009979 [exp] 122 / 1e-28 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10038038 [exp] 120 / 4e-28 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10004132 [exp] 102 / 1e-22 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206200 [exp] 311 / 4e-99 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 188 / 7e-53 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 185 / 2e-51 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 175 / 1e-47 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 131 / 1e-32 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.005G043900 [exp] 132 / 3e-32 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 130 / 1e-31 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044000 [exp] 127 / 9e-31 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.018G078701 [exp] 122 / 2e-29 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.005G044200 [exp] 83 / 2e-16 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10042965 pacid=23168271 polypeptide=Lus10042965 locus=Lus10042965.g ID=Lus10042965.BGIv1.0 annot-version=v1.0 ATGGCGAATGCACCTACGAGGGAGAGGCAAACATTGAATACGATCGAAGCCGCTCTGAAATTGATCGACGCGAAGAAGGATAAGCTAAAGGAGGCGTACG ATGAACTTCAACTCCATTCTTCTATTCTCACCTGCTCCCTGTCGTGGGATGACCTCGATTCCCACTTCTCTTCTCAGCAGGCTGATCTCAATCGCCGATT CCACCACCTACAATCCCGGGAGAAGGCTCCCTCATCATCATCAAACAAGCAGAACGGCGTTGCGACGAATTTCAATCAAGCTTCATCTTCTCAACCAGCG GGTGACGACAGCGGTGGTGGACTTGAGTATGAGCCTGACGATGCAGAAGGATTGGGTGAGGATGAGGAGGAACCGATGGTTCTTCAGCCGGTAGCAGCTC GCCCTGAGTTGACACTCTTCTGCGAGAAGCTGGATGGAAAAGGGTTGAGAGACTACATTAGCGACCATGCCAAGGAGAGGGTTCCCATTCGGGCCGAACT CACTAGCGCAATGCAGGTGAGCAGTGACCCTGGTACTATGGTTTTGGACGCAATGGAAGGCTTCTATCCCGCGAATACTTCGCCTTCAAAGGACCAGCAG GAATTGTATCGTCAGCGGAAGAGTTGTTTGGACTTGTTAGAAGTGTTGGTTAATATCAAGCCTGATGTAAGTGATGAGGTGAGGGAGACAGCTAAACAGT TGGCGTTGGAGTGGAAAGGTAAAGTGAGCTTGGCTGCTGATAACCCTTCTGAGGCGTTGGCCTTCTTGAATGTGGTGGCAGCTTTTGGATTGCGGGATCA TATTGATGTTACCGATCTTGTGAGTTACTTTGTTGTCATTGCCAAGTTCAAGCAAGCTATGTCTCTCTGCCGGAATATTGGCCTGGGAGAAAACGTTGCA GTTCTTGTGCAGAAACTTATAGAAAGTGGCAAACAACTTCTGGCTGTCAAATTTATTTATGAATTTGGATTGACTGACAAGTTTCAAGCAGTGTCATTAC TGAAGGAAGTTGTAAATGAGTGCAAAAAGTCCACTAACCGAGTTGGAAAGAGTCCTACGAAGGCGCAGCATGAAGCCAGGTCTAAAGAACTTAATGCATT GAAGTCAGTGCTTCAAGTCATCGACGAACACAAACTTGAATCGGAGTATCCCAGAGAGGAGATTGAAAAGCGTATAGAGATATTGCAAATGCAGAATAAG ACTGATGGGAAACGGGCTACACAATCTTCCGACACCAAGCCTCAGCAGCAGCAACAACAGCCAAAGAAGAGGAAGCAAATGCCGGTAAAGAAACAGCCGC AAGGGAAGAAGCCGCAACATAATGGAAATAATCGATTCAGACCTCAAATCGGTGGAACGTCATCATATCACCAACCTCATTTGCAGCAGCCAACAGGATT GTATCAAGCAGCTCGACCTTATGGCGCCATGGTGAGTGCCTCTCCTCCTGTAGGCGGCCCTTATGCAGCAGGTTCATATGCGGTTGGGCCGTATGGTTCG ACGGGACCTGGAGGGGGATTTCCTGGGAATCCAAACCGCCCTGTAGCTCAACAATACACTTCTGAGTCCCAAATGGTGCCTCCAGGGTATTATGATGGTG GCCAAGCTACTGGTTATCACGGTGGATATGGTTATCCACCTCCTCAACATCATCAAAACTACTACCCTTAA
AA sequence Show only first row Show all	>Lus10042965 pacid=23168271 polypeptide=Lus10042965 locus=Lus10042965.g ID=Lus10042965.BGIv1.0 annot-version=v1.0 MANAPTRERQTLNTIEAALKLIDAKKDKLKEAYDELQLHSSILTCSLSWDDLDSHFSSQQADLNRRFHHLQSREKAPSSSSNKQNGVATNFNQASSSQPA GDDSGGGLEYEPDDAEGLGEDEEEPMVLQPVAARPELTLFCEKLDGKGLRDYISDHAKERVPIRAELTSAMQVSSDPGTMVLDAMEGFYPANTSPSKDQQ ELYRQRKSCLDLLEVLVNIKPDVSDEVRETAKQLALEWKGKVSLAADNPSEALAFLNVVAAFGLRDHIDVTDLVSYFVVIAKFKQAMSLCRNIGLGENVA VLVQKLIESGKQLLAVKFIYEFGLTDKFQAVSLLKEVVNECKKSTNRVGKSPTKAQHEARSKELNALKSVLQVIDEHKLESEYPREEIEKRIEILQMQNK TDGKRATQSSDTKPQQQQQQPKKRKQMPVKKQPQGKKPQHNGNNRFRPQIGGTSSYHQPHLQQPTGLYQAARPYGAMVSASPPVGGPYAAGSYAVGPYGS TGPGGGFPGNPNRPVAQQYTSESQMVPPGYYDGGQATGYHGGYGYPPPQHHQNYYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	0	1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	4.5	0.7407
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	6.6	0.7763
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	8.0	0.7361
AT3G22430			unknown protein		Lus10041204 [exp]	10.4	0.7480
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10035321 [exp]	10.4	0.6882
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	10.7	0.7399
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	13.4	0.7140
AT2G44020			Mitochondrial transcription te...		Lus10004535 [exp]	14.5	0.7378
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	15.2	0.7630
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	16.9	0.6886

Compare expression of checked genes

Lus10042965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.