Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20050 992 / 0 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 314 / 4e-100 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 288 / 2e-90 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 270 / 7e-84 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 231 / 1e-68 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 230 / 3e-68 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 213 / 1e-61 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 208 / 4e-60 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 202 / 5e-58 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 57 / 3e-08 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032467 [exp] 1063 / 0 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10037214 [exp] 1059 / 0 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10008406 [exp] 323 / 8e-104 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036714 [exp] 308 / 1e-102 AT3G20050 293 / 2e-97 T-complex protein 1 alpha subunit (.1) Lus10026773 [exp] 285 / 1e-89 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032176 [exp] 278 / 9e-87 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 274 / 2e-85 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 274 / 3e-85 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 258 / 5e-79 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058500 [exp] 997 / 0 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 983 / 0 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 332 / 5e-107 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 327 / 3e-105 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 286 / 9e-90 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 285 / 1e-89 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 271 / 5e-84 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 267 / 1e-82 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 234 / 8e-70 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 232 / 5e-69 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10042966 pacid=23168139 polypeptide=Lus10042966 locus=Lus10042966.g ID=Lus10042966.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCATCCCAAACTCTGGATATTCAAGGCGAACGCCAGTCTGGCCAGGACGTCCGCGCTCAAAATGTGATGGCTTGCCAAGCCGTTTCAAACA TTGTTAAATCCTCACTAGGTCCCGTTGGGCTTGACAAGATGCTGGTGGATGATATTGGTGACGTGACCATTACTAATGATGGTGCAACAATACTTAAGAT GCTAGAGGTGGAGCATCCTGCTGCCAAGGTGCTTGTAGAATTGGCTGAACTCCAAGACAAAGAAGTTGGAGATGGAACAACTTCAGTTGTAATAGTAGCA GCAGAGTTGCTTAAGAGAGCTAATGATTTGGTGAGGAACAAGATCCATCCAACATCAATAATCAGTGGATTCAGACTGGCAATGAGGGAAGCGTGCAAAT ATATTGATGAAAAATTGGCTGTGAAGGTTGAAAAACTTGGAAAGGATTCCCTGGTAAACTGTGCTAAGACCAGTATGTCTTCAAAATTGATAGCCGGTGA CAGCGACTTCTTCGCTAATTTGGTATGTGTTGCTAATTTGGTTGTTGATGCTGTACTATCAGTGAAGATGACAAATGTACGAGGAGAAATCAAATACCCA ATCAAGGGTGTTAATATTCTAAAAGCTCATGGTAAAAGTGCAAGAGATAGCTACCTGTTGAATGGGTATGCCCTAAATACTGGCCGTGCTGCTCAAGGAA TGCCAACCAAAGTCTCACCTGCTAGAATTGCATGTCTTGACTTCAACCTTCAGAAGACAAAGATGCAATTAGGTGTCCAAGTGGTTGTCACTGATCCCAG GGAGCTTGAGAAGATTCGTCAAAGGGAAGCTGATATGACAAAGGAGCGGATTGAAAAACTCTTAAAAGCGGGAGCCAACGTAATTTTAACTACCAAAGGA ATTGATGACATGGCTCTAAAGTACTTTGTGGAGGCTGGAGCTATTGCTGTGAGGCGCGTCCGTAAAGAAGATATGCGCCATGTTGCCAAAGCCACTGGTG CAACCATGGTTTCAACCTTTGCTGATATGGAAGGGGATGAGACATTTGATTCTTCACTTCTTGGGTCAGCTGATCAAGTCGTAGAAGAGCGCATTGCAGA TGATGATGTCGTTATGATAAAGGGAACAAAAAACACTAGTGCGGTTTCCTTGATTCTTAGAGGAGCAAATGACTACATGCTCGATGAGATGGAGAGAGCC CTGCATGATGCTTTATGCATTGTGAAGAGGACGTTGGAGTCCAGCACAGTAGTGGCAGGTGGAGGTGCTGTTGAGTCTGCCTTGTCTGTGTACTTGGAGT ATCTTGCGACAACTCTGGGATCACGAGAGCAATTGGCTATTGCTGAATTTGCTGAATCTCTGCTGATCATACCGAAGGTGCTTGCTGTTAATGCTGCAAA GGATGCAACTGATTTGGTCGCAAAGCTACGTGCGTATCACCACACTGCACAGACAAAAGCTGATAAGAAACATCTCTCCAGCATGGGGCTAGACCTTTCA AAGGGTACCATTCGAAACAACTTAGAGGCAGGAGTAATTGAACCTGCAATGAGCAAAGTGAAGATAATACAGTTCGCTACAGAAGCAGCCATAACAATTC TCCGAATAGAAGAAAAGATCAAGCTTGTTCAAGGTATGATCAAACTTGTCAAGGAAGACGATGGTCAGGAATAG
AA sequence Show only first row Show all	>Lus10042966 pacid=23168139 polypeptide=Lus10042966 locus=Lus10042966.g ID=Lus10042966.BGIv1.0 annot-version=v1.0 MALSSQTLDIQGERQSGQDVRAQNVMACQAVSNIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDKEVGDGTTSVVIVA AELLKRANDLVRNKIHPTSIISGFRLAMREACKYIDEKLAVKVEKLGKDSLVNCAKTSMSSKLIAGDSDFFANLVCVANLVVDAVLSVKMTNVRGEIKYP IKGVNILKAHGKSARDSYLLNGYALNTGRAAQGMPTKVSPARIACLDFNLQKTKMQLGVQVVVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKG IDDMALKYFVEAGAIAVRRVRKEDMRHVAKATGATMVSTFADMEGDETFDSSLLGSADQVVEERIADDDVVMIKGTKNTSAVSLILRGANDYMLDEMERA LHDALCIVKRTLESSTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATDLVAKLRAYHHTAQTKADKKHLSSMGLDLS KGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIEEKIKLVQGMIKLVKEDDGQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	1.0	0.9803
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	1.4	0.9738
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	2.4	0.9737
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	3.0	0.9542
AT3G12870			unknown protein		Lus10031198 [exp]	3.2	0.9604
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	4.0	0.9545
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	5.3	0.9608
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	7.0	0.9591
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	7.2	0.9483
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	7.7	0.9596

Compare expression of checked genes

Lus10042966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.