Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18524 1467 / 0 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 213 / 1e-57 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT4G25540 206 / 1e-54 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 200 / 2e-52 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 182 / 5e-47 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G20475 176 / 3e-45 ATMSH5 MUTS-homologue 5 (.1) AT5G54090 86 / 5e-17 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 86 / 6e-17 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 61 / 5e-09 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032469 [exp] 1869 / 0 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 192 / 7e-54 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10010010 [exp] 202 / 5e-53 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 193 / 2e-50 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10007489 [exp] 181 / 2e-47 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10017724 [exp] 179 / 8e-46 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10028966 [exp] 143 / 4e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 142 / 2e-34 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025030 [exp] 119 / 5e-27 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060000 [exp] 1593 / 0 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.001G156200 [exp] 213 / 1e-57 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.015G142900 [exp] 214 / 3e-57 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 214 / 4e-57 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.011G089500 [exp] 187 / 6e-49 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.006G156314 [exp] 178 / 2e-45 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 177 / 4e-45 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.008G191051 [exp] 96 / 1e-21 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 86 / 7e-17 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 84 / 3e-16 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10042967 pacid=23168393 polypeptide=Lus10042967 locus=Lus10042967.g ID=Lus10042967.BGIv1.0 annot-version=v1.0 ATGGCAGATCCCGACTTTCACGAGGCAAACAAATTGCCGGAGCTCAAGCTAGATCCTAAACAGGCTCAGGGGTTTCTTTCTTTCTTCAAAACCCTAGCGC AGGACTCTCGAGCAATTCGGCTCTTTGATAGACGGGACTATTACACGGCTCATGGCACAAATGCAACTTTTATCGCCAAAACCTATTACCACACGACCAC TGCCTTGCGACAGTTGGGTAATGGGTCTGATTGTCTTTCTAGTGTGAGCATTAGTAGGAATATGTTTGAGACAATTGCTCGAGATGTTCTTCTGGAGAGA ACAGACCACACCCTTGAACTGTATGAGGGCAGTGGGTCTAATTGGAGACTAGTCAAAAGTGGAACTCCTGGGAATCTAGGGAGTTTTGAAGATGTTTTAT TTGCCAACAATGAGATGCAGGATTCTCCTGTCGTTGTTGCTATCTTCCCAAACTTTCGTGGTGATGGGTGCACAGTGGGTTTAAGCTATGTTGATTTGAA TAAAAGAGTTCTTGGGTTGGCAGAATTTCTTGATGATACTCATTTTACAAATGTCGAATCTGCTCTGGTTTCTCTAGGCTGCAAGGAGTGCCTTTTACCT ATGGAGGCTGGCAAAGGCAGTGAAACTAGAACTTTGCATGATGTCTTTGAAAAATGTGCTGTCATGTTAACAGAGCGAAAGAAAAATGAGTTTAAAGCGA GAGATTTAGTGCAGGATCTAGGGAGGCTTGTCAAAGGTTCCATTGAACCAGTTCGAGATTTGGTTTCTGGGTTTGAATTTGCATCTGTTGCTTTGGGGGC CTTAGTGTCTTATGCAGAATTGCTTGCGGATGAGAGTAACTACGGAAGTTATACCATTAAAAGGTACAATCTTGACAGCTACATGAGGTTGGATTCCGCA GCCATGAGGGCACTGAATGTTCTTGAAAGCAAAACTGATTCAAACAAAAACTTCAGTTTATTTGGTCTAATGAATAGAACTTGTACTGCTGGAATGGGGA AAAGACTGCTTCACTTGTGGTTAAAGCAGCCTCTTCTGGATGTGGAAGAAATTAACTCTAGGTTGGATTTGGTACAGGCTTTTGTAGAGGATGCCACAGT CCGGCAAAATCTGAGGCAGCATCTTAAAAGAATTGCGGACATCGAGCGACTACTACGTAATCTTGAGAAAAGAAACGCTGCTTTGCATCATATCGTGAAA CTGTATCAGTCTTGCATAAGGCTCCCTTTCATCAAAAGTGCTTTGGAGGATTACGATGGGCAGTTTTCATTATTGATCAAAGAAAGGTATCTGCAGCAGT TGGAGCAATGGATGGATGATGATCACTTAAATAAGTTTATAAGTCTAGTGGAAACTGCAGTTGATCTTGATCAGCTTGACAATGGAGAATACATGATATC ACCTGGCTATGACTCTGCTCTATGCATATTGAAGGAAGAGCTAGAGTCATTGGAAAAAGAGATCCACGACTTGCATAAGAAAACTGCTAAAGATCTTGAT CTTCCAGTTGATAAGGGGTTGAAGTTGGATAAGGGAACACAGTTTGGCCATGTATTCAGGATTACCAAGAAGGAAGAGCCAAAAATAAGAAAGAAATTGA CATCTCAATTTATTGTCCTTGAAACTCGAAAGGATGGAGTGAAATTCACAAACACAAAACTTAAAAAGCTAGGTGACCGATACCAAAAGGTGGTAGAAGA TTACAAGAACTGTCAAAAAGAGATCGTTAATCGAGTGGTGCAAACTACAGCAACTTTTTCAGAGGTGTTTGAATTGTTAGCTGCCAAACTCTCGGAATTG GATGTCTTACTCAGTTTTGCTGATCTTGCTTCTAGTTGTCCCACTCCATATACGAGGCCGGACATCACTCCACCTGATGTGGGAGATATTATATTGGAAG CAAGTAGGCATCCATGTGTGGAAGCTCAGGATTGGGTGAACTTCATACCAAACGATTGCAAACTTGTCAGAGAAAAGAGCTGGTTCCAGATTATCACAGG GCCTAATATGGGTGGGAAGTCCACATACATTAGACAGATTGGTGTGAATATTCTCATGGCACAAGTGGGTTCTTTTGTTCCATGTGACAAGGCTACCATT TCCATCCGCGATAGCATTTTTGCTCGTGTAGGTGCTGGTGACTGCCAACTGCGTGGGGTGTCTACTTTTATGCAAGAAATGCTCGAAACTGCGTCAATAC TGAAAGGAGCTACTGACAAGTCATTGATAATCATTGATGAGTTAGGCCGTGGAACTTCCACTTATGATGGATTTGGTTTAGCATGGGCTATTTGCGAGCA TCTTGTTCAAGTGATCAAAGCACCCACTTTATTTGCTACTCATTTTCATGAGCTGACTGCATTAGCTAGCGAGGAAGCAGGGTGTACATCTGATCAAAAG CAAATCGCCGGTGTAGCAAACTACCATGTTAGTGCACACATTGACTCATCAACACGCAAACTCACCATGCTATATAAGGTTGAGAAGGGTGCTTGTGATC AGAGTTTTGGCATTCATGTTGCAGAATTTGCAAATTTCCCTGAAAGTGTTGTTGCTCTTGCCCGCGAGAAGGCTTCCGAATTGGAAGGTTTCTCGCCAAG TGCTATCATTTCAAACGACACAACGAAGGAGGAGGCTGGCTTGAAAAGGAAGAGAGAGTTTGATGCGGAGGAGACATCGAGAGGGCAAGCAAGAGCGCGT CAGTTTCTGAAAGAGTTCTCTGAGTTGCCACTGGAGAAAATGGAGTTTGAGGAAGCCCTGGAAAAGGTTAGGGGGATGAAGGATGAAATGGAGAAGGATG CTGGAAGCTGCGATTGGCTTCAGCAGTTCTTATAA
AA sequence Show only first row Show all	>Lus10042967 pacid=23168393 polypeptide=Lus10042967 locus=Lus10042967.g ID=Lus10042967.BGIv1.0 annot-version=v1.0 MADPDFHEANKLPELKLDPKQAQGFLSFFKTLAQDSRAIRLFDRRDYYTAHGTNATFIAKTYYHTTTALRQLGNGSDCLSSVSISRNMFETIARDVLLER TDHTLELYEGSGSNWRLVKSGTPGNLGSFEDVLFANNEMQDSPVVVAIFPNFRGDGCTVGLSYVDLNKRVLGLAEFLDDTHFTNVESALVSLGCKECLLP MEAGKGSETRTLHDVFEKCAVMLTERKKNEFKARDLVQDLGRLVKGSIEPVRDLVSGFEFASVALGALVSYAELLADESNYGSYTIKRYNLDSYMRLDSA AMRALNVLESKTDSNKNFSLFGLMNRTCTAGMGKRLLHLWLKQPLLDVEEINSRLDLVQAFVEDATVRQNLRQHLKRIADIERLLRNLEKRNAALHHIVK LYQSCIRLPFIKSALEDYDGQFSLLIKERYLQQLEQWMDDDHLNKFISLVETAVDLDQLDNGEYMISPGYDSALCILKEELESLEKEIHDLHKKTAKDLD LPVDKGLKLDKGTQFGHVFRITKKEEPKIRKKLTSQFIVLETRKDGVKFTNTKLKKLGDRYQKVVEDYKNCQKEIVNRVVQTTATFSEVFELLAAKLSEL DVLLSFADLASSCPTPYTRPDITPPDVGDIILEASRHPCVEAQDWVNFIPNDCKLVREKSWFQIITGPNMGGKSTYIRQIGVNILMAQVGSFVPCDKATI SIRDSIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFATHFHELTALASEEAGCTSDQK QIAGVANYHVSAHIDSSTRKLTMLYKVEKGACDQSFGIHVAEFANFPESVVALAREKASELEGFSPSAIISNDTTKEEAGLKRKREFDAEETSRGQARAR QFLKEFSELPLEKMEFEEALEKVRGMKDEMEKDAGSCDWLQQFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	0	1
AT1G75150			unknown protein		Lus10010814 [exp]	2.0	0.9461
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	2.8	0.9501
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	4.9	0.9174
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	5.6	0.8900
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	7.1	0.9279
					Lus10026146 [exp]	7.5	0.9304
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	7.7	0.9254
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	8.4	0.9238
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	13.4	0.9281
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	14.7	0.9228

Compare expression of checked genes

Lus10042967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.