Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 100 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 100 / 2e-24 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 96 / 4e-23 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 91 / 4e-21 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 87 / 6e-20 ATPRR1 pinoresinol reductase 1 (.1) AT1G19540 86 / 2e-19 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 84 / 7e-19 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 72 / 1e-14 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032470 [exp] 282 / 3e-94 AT1G75290 226 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035058 [exp] 145 / 3e-41 AT1G75290 212 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042311 [exp] 103 / 5e-26 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 103 / 7e-26 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10021709 [exp] 100 / 2e-25 AT1G75290 83 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026351 [exp] 102 / 3e-25 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 103 / 4e-25 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 100 / 7e-25 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 99 / 2e-24 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050200 [exp] 200 / 1e-62 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G116500 [exp] 176 / 3e-53 AT1G75290 242 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G129800 [exp] 175 / 1e-52 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 107 / 2e-27 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 103 / 5e-26 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 102 / 1e-25 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 102 / 2e-25 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 98 / 1e-23 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 96 / 4e-23 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G104000 [exp] 83 / 6e-20 AT4G39230 96 / 6e-25 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10042968 pacid=23168300 polypeptide=Lus10042968 locus=Lus10042968.g ID=Lus10042968.BGIv1.0 annot-version=v1.0 ATGAAAAGCGTTAATGGGTTGGACGTCCCAGCAGCAGCAGGAGGGCGGACCATGATCATTGGTTCAACCGGGTGCATCGGTTGGTACATAGCCGATGCAT GCCTACAATCCGGACGGCCCACTTACCTTCTAGTCCGTCAAGGAACAGGATTCATAAACTCATCATCCTCAAAAGCTTCCAAGATCAAGCCCCTCCTGGA CAAAGGAGCCACCATCCTTCATGGATGTATAAAGGATGGAGAGCTGATGGAGAAGATGATAAGAGAGAACAAGATTGAGGTTGTGATATCAGCTGTAGGA GGGGAAACGTATTTTATTGCTGGGACTGATATTGGCAAGTTCACAATGAGAGCAGTTGAAGATGCTCGCACTCTCAACAAAACCCTCCATTTCCAACCAA AATCAAATCTTCTAAACATCAACCAGCTTGCCGACATTTGGGAAGCTCAACTCGGACGCGACCTTCCGCGAGTCACCATCACCGAGGATGACTTACTTTC CGCTGCCAGAGAAATGCGAATCCCGCAGAGCATTGTGGCGGCCCTAACCCACGATATTTTCATAAACGGTTGCCAGGTCAACTACAACCTCAACCAGTCA ACCGACGTTGAAGTCTGCTCCCTCTATCCAGATTTGTCTTTCCGAACCGTCGATGACTGCTTTAAAGAGTTCTTAACGAGGGTCGATGACGACGACGATG AAGCAACGAAACATACCAAGCCTCCTCCCTCCAGCAGCAGTAGCAAAGGCAGTATCATGTTGGCAAGTTCCAAGACAGAAGTTGTTTCCATAACAGCATA A
AA sequence Show only first row Show all	>Lus10042968 pacid=23168300 polypeptide=Lus10042968 locus=Lus10042968.g ID=Lus10042968.BGIv1.0 annot-version=v1.0 MKSVNGLDVPAAAGGRTMIIGSTGCIGWYIADACLQSGRPTYLLVRQGTGFINSSSSKASKIKPLLDKGATILHGCIKDGELMEKMIRENKIEVVISAVG GETYFIAGTDIGKFTMRAVEDARTLNKTLHFQPKSNLLNINQLADIWEAQLGRDLPRVTITEDDLLSAAREMRIPQSIVAALTHDIFINGCQVNYNLNQS TDVEVCSLYPDLSFRTVDDCFKEFLTRVDDDDDEATKHTKPPPSSSSSKGSIMLASSKTEVVSITA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75280			NmrA-like negative transcripti...		Lus10042968 [exp]	0	1
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026608 [exp]	4.2	0.7227
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	16.6	0.7449
AT2G43770			Transducin/WD40 repeat-like su...		Lus10003390 [exp]	18.8	0.7150
					Lus10036058 [exp]	21.2	0.7234
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	29.4	0.7061
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	37.1	0.7453
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	41.0	0.7124
AT3G57500			unknown protein		Lus10012197 [exp]	54.4	0.6563
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	70.1	0.7110
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	98.1	0.7141

Compare expression of checked genes

Lus10042968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.