Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18470 675 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G73950 650 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 594 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT4G39050 60 / 3e-09 Kinesin motor family protein (.1) AT2G21380 58 / 1e-08 Kinesin motor family protein (.1) AT3G12920 54 / 1e-07 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT2G35330 50 / 2e-06 RING/U-box superfamily protein (.1.2) AT3G06140 47 / 1e-05 RING/U-box superfamily protein (.1) AT5G19080 46 / 4e-05 RING/U-box superfamily protein (.1) AT1G63900 44 / 0.0001 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032471 [exp] 877 / 0 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10021710 [exp] 554 / 0 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 545 / 0 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10027994 [exp] 61 / 7e-10 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10017969 [exp] 58 / 1e-08 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 57 / 3e-08 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10008163 [exp] 55 / 7e-08 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10004557 [exp] 52 / 4e-07 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 52 / 7e-07 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050300 [exp] 730 / 0 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.012G060100 [exp] 726 / 0 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 597 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.010G129932 [exp] 110 / 6e-29 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 59 / 5e-09 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 58 / 1e-08 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.001G144200 [exp] 54 / 2e-07 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 54 / 2e-07 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.014G138000 [exp] 51 / 6e-07 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.008G198300 [exp] 49 / 7e-06 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [flax] [poplar] Tmemb_185A Transmembrane Fragile-X-F protein
Representative CDS sequence Show only first row Show all	>Lus10042969 pacid=23167974 polypeptide=Lus10042969 locus=Lus10042969.g ID=Lus10042969.BGIv1.0 annot-version=v1.0 ATGACAAGCTGGAGAAGAGTGTTGAAGTCTGCGCAGGCCCTAGCTGCCCACGTCCTCCTGTTTAATTTTACTCTTGTGTTGGTGCTTAAGCTCGAGCGTT TCTTCTACTGCTCTTGGTGGTTGGTTTTCTTCCCTCTGTGGGTCTTCCATGGGGTTGTTGCTCGAGGGAGGTTTTCGTTGCCCGCTCCATCAGTTCCACA CAATCGTCATTGGGCTCCATGTCATGCAGTAGTTGCAGCACCCTTGCTTACAGCATTTGAGCTCCTCCTATGCATTTATCTCGAGAGTGCTGACATTCAT GGTATCCCTGCTGTAGACTTGAAGATTGTATTCCTTCCTCTGTTGCTATTCGAAATAACTATATTAGTTGATAATTTCAGAATGTGTCGAGCTCTTATGC CGGGTGATGAAGACAGCATGAGTGATGCAGCAATATGGGAAACATTGCCTCACTTCTGGGTTGCAATCTCAATGGTCTTCTTCTTAGCTGCTACAGTCTT CACCGTTCTCAAGCTATCGGAATGTTTTGCCTTCCTTGTTTGCACTAGGTGGTCAAATCCAGTCATTCATAGAACTACTCAGTCAAGGGAAGCTGGTTCA TCCTCATCTGCCATTAGATATCTTGACTGGAACAGTGGCTTACTGCTTTCTCCAGAGGAGAATAATGAACAAGAGAGAATGTGTGGTTTGCAAGACATTG GTGGCCACATCATGAAGATTCCATTGATTTGTTTCCAAGTACTCCTTTGCATGCGTTTACAGGGAACACCCGCTGGAGCCAGAAACATTCCCCTGTCTGT TATTTTCTGTCCTCTGTTCCTCCTTCAAGGTGCTGGTGTTCTACTTGCTGCCTCAAAATTGGTGGAGAAACTTATTCTCTTGTTGCGGAGTGAAGCTAGT GCTGGAAGGTACTTCAGATTTTCATCGAGGTTTCATGACTCCTTGGAGTTCTTGCGACATGGTTCCAGACTAATGGGGTGGTGGTCTATTGATGAAGGAA GTCGAGAGGAGCAAGCCCGACTGTACCGTGAAGGAGCTGCAGGATACAATACCTTTTCTGGTTATCCTCCTGAGATAGTTAAAAAAATGCCTAAAAAGGA TCTCGCTGAAGAGGTTTGGAGGCTGCAGGCCGCCCTTGGAGAGCAAACAGAAGTAACCAGATACAGTCAGCAGGAGTTTGAGAGGCTGCAAAATGAGAAA GTGTTATGCAGGGTTTGCTTTGAAGGCGAGATCAATATAGTCCTACTTCCCTGTAGGCATCGCATCCTCTGCAGCACGTGCTGTGAGAAGTGTAAGAAGT GCCCAATCTGCAGGGTTCCCATCGAGGAGCGGTTGTCAGTGTACGATGTATAG
AA sequence Show only first row Show all	>Lus10042969 pacid=23167974 polypeptide=Lus10042969 locus=Lus10042969.g ID=Lus10042969.BGIv1.0 annot-version=v1.0 MTSWRRVLKSAQALAAHVLLFNFTLVLVLKLERFFYCSWWLVFFPLWVFHGVVARGRFSLPAPSVPHNRHWAPCHAVVAAPLLTAFELLLCIYLESADIH GIPAVDLKIVFLPLLLFEITILVDNFRMCRALMPGDEDSMSDAAIWETLPHFWVAISMVFFLAATVFTVLKLSECFAFLVCTRWSNPVIHRTTQSREAGS SSSAIRYLDWNSGLLLSPEENNEQERMCGLQDIGGHIMKIPLICFQVLLCMRLQGTPAGARNIPLSVIFCPLFLLQGAGVLLAASKLVEKLILLLRSEAS AGRYFRFSSRFHDSLEFLRHGSRLMGWWSIDEGSREEQARLYREGAAGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEVTRYSQQEFERLQNEK VLCRVCFEGEINIVLLPCRHRILCSTCCEKCKKCPICRVPIEERLSVYDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	0	1
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	1.0	0.9680
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	1.4	0.9676
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	3.5	0.9536
AT3G50150			Plant protein of unknown funct...		Lus10039369 [exp]	3.7	0.9517
AT3G14830			unknown protein		Lus10041938 [exp]	4.7	0.9498
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	5.3	0.9618
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	5.5	0.9614
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	5.5	0.9624
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	5.7	0.9508
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	8.9	0.9456

Compare expression of checked genes

Lus10042969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.