Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73930 840 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032474 [exp] 1158 / 0 AT1G73930 957 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049900 [exp] 907 / 0 AT1G73930 865 / 0.0 unknown protein Potri.012G060200 [exp] 893 / 0 AT1G73930 847 / 0.0 unknown protein Potri.001G289250 [exp] 56 / 7e-10 AT1G73930 55 / 8e-11 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF07792 [flax] [poplar] Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking
Representative CDS sequence Show only first row Show all	>Lus10042970 pacid=23168397 polypeptide=Lus10042970 locus=Lus10042970.g ID=Lus10042970.BGIv1.0 annot-version=v1.0 ATGATCGTCTCACCCATTACTACGAGAGTGCGCACTGCAGCAGCAGCAGCAAATCCGGCTGTGTTTTCATCGACGTCCGATTTTTCTACTTTGAGAGTCA TTTATCTCGAGTTTCATAAAACCCTCAGCCGTCAGTTTGACCGGCGACAATCCGGCGCTAGATCTCCATTTGTCTTTGTTTGTGACTCTGCTTCGGAAGA TTTACATACATGCCCCCTTTCGCCTAATCGAGTGCCCATTTTATTCTCCGATCTGGTTCAGTTCTATGGACTCATCTTGAAGCACTCATGTTTAGCTTCA ATTAGCTATGTAGAGAAATGTCATTCGAGTGAATGCAGATCTCATTTTTGCATAACCGCGTGTTTCTGGGTTCTTGTAGCTGTTCTAGATCACTCACTTC CGTTGTTCAGTAAAAAAAAAGCTCCAAGACGAAGTTTCAACATAGAGTTAATAAGCACTTGCAGACAAGGAACTCTAGTAGACTGTCTGCTTGGGATTAG CGATGGAAGATGCGGGGTGTTTATCGTTATGAGGGATGAAGATAAGACCATTGGATTCCCAAACATGAGTCGATCGCCATCCTTTTCCTTAAAATCAGAA TCTAGCATCAAGGTTGATCCAGAGTCCCTTCAGCAATGGGTTGTAGCATTTTGTATCATCAGATTTGATCTTGAGCAAGGTCAGCTGATTGAAGAATGTT ATCCATCTGGTTCTTTGTCAAGTGAGGAGGAACTGGATGTTGCCTTCAGTTCCTTTCCGGATTCTGTTTCTCAACACCAGAACCGTTCTAGCATTCATGA CTGCATGTTCTTTTTCCGTGTCCAGAGGCGTAAAGGCTCTGAACGGAATGATGTGAAGTCATCGGACATAGAACTGGCGAAATCCATGCCCAGCAATGAT GTTAGAAGCAATAAATACTTGTATGGGTATGTATTCAACCGGCAGAGACATGACGAAAGGTTAAAGCGGGGAGGAGAACAGAAGTCCGTAGTTATATTAT CTCACAGCCCTTATTCTTCCGTGTTCAGACCATTGTTACAGATTATGGGTCCATTATATTTTGACATTGGAAACTTGGCGCTTGAGCATATTGCTACATA TGTGTCTATATGGCCTTCTCCTGTACCTGGTAAGCCAATGGAGCTTCCTATTGGTAATGCCACACTCAAAGTGAACCTCCCTCCTGCTCATTGCTTACCT TTGGAAAAAGGATTGCACGAGGAATCGTCTTCATCGGTGGCTCCTCTACTTCCAACTAATCAATCAATCCCACAGGGGCTTTTCCATGATTCCGATGTAT TTGGTATATTCCGTGGGATTCTATTACAACTGTGGTTGTTATGGGAATTATTGTTGATTGGTGAACCTATTCTCGTCATAGGACCTACTCCCCCTCAATG TAGTGAGGCAGTTGCAAGTCTTGTCAGTTTGGTTGCGCCATTGTTGTTCAGTGTTGATTTTAGGCCTTATTTTACCATTCATGATCCAGAATTTGCTCGA TTGAATTCCCTGCAAGACGGTGACACTTTTCCTCCAATGGTTTTGGGTGTGACGAATCTGTTCTTCCTTAAGTCTCTTCGTAATGTTCGCCATTTTGTGT CAGTTGGAAGCCCAGCAGGCATATCTAACCGTACGCCCATTTCAAATAGGTTCTCTTCCGGTGGGTCTATGAGACAAGAGGGGTCTGGTCTTCAGCAGCT ATCTTTTAGAAGGTTTTCTGCGTCAAGTCTCTTAAATGCCGTTAAGCTTAAGAGAGAAGGGCCTCTTTCCCTTATGACTGAACATAAGGAAGCCATTTGG ACTAGTTATGCTGCAGTAACTAAGCCGGATACTTCAATTCTTAACCGGCTTATTGATGCTGGGATGTCTCCAAGGGTTGAGGAGTCCATGTCAGTTGTAA ACAATGAGATATTGCGCCGGCATTTCTTGGAGCTTACGACTAACTTCTTGGCTCCTTTTGGCCCGTATTTTAGGGCAACAACACCATGTGAAGGATCTTC TCCATTTCTTGATCCACCTCCTCTCCCTCCCTTTAACGTCGATGAATTTTTGACAAGTTTATCAGCAAGAGGTGTAGGGAAGTTTCTATCAAAGCGAATG CGATCAAATTGGATGGATTTATACAGGCGGTTCCTGAAAGGGCCAAACTTTATGCCATGGTTTCAGAGAAGGCGTGATGTTGCAGAACAAGAACAACATA GGCTATGGAGGCAAGCAAGGATGACTACGGATATAAGATTATTCATATCAACGATGTCTGAACTGGAAATTGTAGATTCCTTTAATGCGATTGAGAGGCA CCTGCTTGTAGAAAATCAGATGGAGCAGCTTGGAAAGGCCAGTGTGGACTGTGCAAGCATTTGCTCAAAGCTGAGAAAAGATCTGCAGCTTGTGTTCAAT GTGCTTCCCAAGGATATGCAGCAGCTCTTGCTCATGAACCCGGAAAAGGCAGCTCTTTTGGATGATTCTATGAGACATCCAGGCGAGGAGAAAGCTTCCG CTTCCCCCTAG
AA sequence Show only first row Show all	>Lus10042970 pacid=23168397 polypeptide=Lus10042970 locus=Lus10042970.g ID=Lus10042970.BGIv1.0 annot-version=v1.0 MIVSPITTRVRTAAAAANPAVFSSTSDFSTLRVIYLEFHKTLSRQFDRRQSGARSPFVFVCDSASEDLHTCPLSPNRVPILFSDLVQFYGLILKHSCLAS ISYVEKCHSSECRSHFCITACFWVLVAVLDHSLPLFSKKKAPRRSFNIELISTCRQGTLVDCLLGISDGRCGVFIVMRDEDKTIGFPNMSRSPSFSLKSE SSIKVDPESLQQWVVAFCIIRFDLEQGQLIEECYPSGSLSSEEELDVAFSSFPDSVSQHQNRSSIHDCMFFFRVQRRKGSERNDVKSSDIELAKSMPSND VRSNKYLYGYVFNRQRHDERLKRGGEQKSVVILSHSPYSSVFRPLLQIMGPLYFDIGNLALEHIATYVSIWPSPVPGKPMELPIGNATLKVNLPPAHCLP LEKGLHEESSSSVAPLLPTNQSIPQGLFHDSDVFGIFRGILLQLWLLWELLLIGEPILVIGPTPPQCSEAVASLVSLVAPLLFSVDFRPYFTIHDPEFAR LNSLQDGDTFPPMVLGVTNLFFLKSLRNVRHFVSVGSPAGISNRTPISNRFSSGGSMRQEGSGLQQLSFRRFSASSLLNAVKLKREGPLSLMTEHKEAIW TSYAAVTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPCEGSSPFLDPPPLPPFNVDEFLTSLSARGVGKFLSKRM RSNWMDLYRRFLKGPNFMPWFQRRRDVAEQEQHRLWRQARMTTDIRLFISTMSELEIVDSFNAIERHLLVENQMEQLGKASVDCASICSKLRKDLQLVFN VLPKDMQQLLLMNPEKAALLDDSMRHPGEEKASASP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73930			unknown protein		Lus10042970 [exp]	0	1
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	2.8	0.8553
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	6.0	0.8498
AT1G73930			unknown protein		Lus10032474 [exp]	7.3	0.8649
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	10.6	0.8457
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10020255 [exp]	14.8	0.7691
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	17.9	0.8228
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	18.3	0.8392
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10016972 [exp]	21.3	0.8355
AT5G55610			unknown protein		Lus10016608 [exp]	21.4	0.7916
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	25.0	0.8392

Compare expression of checked genes

Lus10042970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.