Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18460 333 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) AT1G73920 315 / 5e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032476 [exp] 400 / 3e-137 AT1G73920 881 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032477 [exp] 339 / 1e-114 AT1G73920 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015159 [exp] 40 / 0.001 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060600 [exp] 339 / 2e-113 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G159900 [exp] 49 / 8e-07 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 45 / 2e-05 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042972 pacid=23168243 polypeptide=Lus10042972 locus=Lus10042972.g ID=Lus10042972.BGIv1.0 annot-version=v1.0 ATGGAGCATCTTTTCCTTATGATGGCCCCTATTCTATCACGGTTCATCCCCGCCTTCTACATACCCACAAGATTCTTCCGTATGCTTTTAAATAAGTTGG CTCGGGACTTCAACAACTACCCAGCAGTTGGAGGGCTGGTCCAAACCCTAATGAGCTACGTAGTTGGCGGAGATAGTTCGAATTGGGTAGGAGTATTGGG TCTTCCCCACTACAACATGAATGATATGCCGGGGGTTTCGTTCTTCGTAGCTCTTCACCTTGCCCAGATGAAGCGTGCAAGAAAATTCATAATGTACGAT TATGGACGTGGTGCCGCAAACATGGAGTATTATGGATCTGCAGAGCCGTTGGATCTGGGAGAGTATTATGGGTTGATTGATATTCCTGTGGACTTAGTTG CTGGGAAGAAGGATAACGTGATTCGGCCGTCAATGGTGATAAAGCATTATAAGCTGATGAAGGAAGCGGGAGTGGAGGTATCGTATAATGAATACGAGTA TGCTCATCTGGACTTCACATTCTCTCACAGGGAGGAACTTTTGGCCTACGTGATGTCTCGAATGATGCTGGTGGAGAAGAAACCGTCGATGAATCAGAAG TCTTTAAAGCTGAAGAAGAAAGAAAAGGAGAATTCGTAA
AA sequence Show only first row Show all	>Lus10042972 pacid=23168243 polypeptide=Lus10042972 locus=Lus10042972.g ID=Lus10042972.BGIv1.0 annot-version=v1.0 MEHLFLMMAPILSRFIPAFYIPTRFFRMLLNKLARDFNNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFFVALHLAQMKRARKFIMYD YGRGAANMEYYGSAEPLDLGEYYGLIDIPVDLVAGKKDNVIRPSMVIKHYKLMKEAGVEVSYNEYEYAHLDFTFSHREELLAYVMSRMMLVEKKPSMNQK SLKLKKKEKENS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	0	1
AT1G70160			unknown protein		Lus10029209 [exp]	1.7	0.9403
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	4.0	0.9154
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	4.0	0.9194
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	4.5	0.9298
AT5G06830			unknown protein		Lus10012023 [exp]	8.5	0.8991
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	10.4	0.9140
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	12.6	0.9130
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	12.6	0.8948
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	13.0	0.9084
AT3G62880		ATOEP16-4	Mitochondrial import inner mem...		Lus10007878 [exp]	13.3	0.8889

Compare expression of checked genes

Lus10042972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.