Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73920 483 / 8e-166 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 451 / 3e-153 alpha/beta-Hydrolases superfamily protein (.1) AT5G14180 82 / 1e-16 MPL1 Myzus persicae-induced lipase 1 (.1) AT2G15230 71 / 4e-13 ATLIP1 lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032476 [exp] 776 / 0 AT1G73920 881 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032477 [exp] 196 / 3e-56 AT1G73920 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031523 [exp] 84 / 4e-17 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10015159 [exp] 81 / 3e-16 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10027861 [exp] 77 / 5e-15 AT2G15230 438 / 2e-152 lipase 1 (.1) Lus10023171 [exp] 75 / 2e-14 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10002808 [exp] 74 / 6e-14 AT2G15230 551 / 0.0 lipase 1 (.1) Lus10041571 [exp] 72 / 3e-13 AT5G14180 525 / 0.0 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 71 / 5e-13 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060600 [exp] 578 / 0 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G159900 [exp] 86 / 4e-18 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 82 / 9e-17 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 75 / 3e-14 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.009G094900 [exp] 70 / 7e-13 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.001G332300 [exp] 61 / 5e-10 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.017G069700 [exp] 42 / 0.0005 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF04083 [flax] [poplar] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Lus10042973 pacid=23168410 polypeptide=Lus10042973 locus=Lus10042973.g ID=Lus10042973.BGIv1.0 annot-version=v1.0 ATGCAGCGGTTTGTTGACTCCACCCTTGCTGTGGCCAAGGAGTCGGTCAAAACATTCACCTATGAGTCCTTGCACAATGTTGTGAGGCTGATAGATGGAG TTTCGGCCCTTCTGTTGACTGTTTTGCCTGGGAAGGCTAATATTCTTGAAGGTCTTCATGGCTGGGAGCTTAGGCCAGCTTTTCGTGGACCCCGTCTGCC TCATTGGATGGAGAATGGGGTATCTTCCTTCAACAAATTTGTTCATGAACTCTCAGTGGATTCGGATATTGATACTTCAGGTTCTGATTATTCTTCAGCT GAAGAAGATGATGAAATGTATCCTCCATCACCAATGTCGTATGGTTCCCGAGTTTCTAATGCAATTCCTTTCAAAAGGAAACGTGGGCTCTTAATTGGAT GGGTTTCATCTATAATCTCTTGGATCATTACACCATTACAAATTTTACTTGGATTTCCGCTTTATTTCTATGGAATATTTTGCACCAAAAGGCCAACAAC TCCTCGCCAAGAAGAAACCTACCATGATTCTCAGTCAACTCCCATCAAGAAAGTACAATCTCTTAAGGATCTGATCATTCACCGTACTACTGACAAGAGA CGTGGAGTCATTGAGGATCTTCATCTAGGAATAGAGATCAGCATTGAAGCTGTATTTGACTTTTTTCACAAAGCGACACAATTTTTTCTTTCACCGACAA AGATTCTAAAAGCTGTCTATCAATGGGTTTTTTATGACAATTACAACCGTGAAGATATCCATAGTGCTGTTTTGGACACCAATGTGCCTGCGACTACACT TGGAGACGATGATCCAGCTCCTAGAGAGAGGAAAGCTACAACTCAAGGGGCTTTAAACACTGATGCTCGTACATGTCAGGATGTCATAACAGAACTGGGG TACCCATATGAAGCAATTCGTGTGATAACCTCTGATGGATATGTTCTCCTTTTGGAGAGAATTCCAAGACGCGACTCGCGCAAGGCGGTTTACCTTCAGC ATGGGGTCATGGATTCGTCGATGGGGTGGGTATCCAATGGTGTAGTTGGATCTCCTGCATTTGCAGCATATGATCAAGGGTTTGATGTTTTCCTTGGAAA TTTACGAGGATTGGTTTCTAGAGAGCACGTTGACAAGAACATTTCTTCCCGACAGTATTGGCGTTATTCCATTAACGAACACGGGACAGCAGATATACCA GCGATGGTTCAAAAAATTCATGACGTCAAAATTGCAGAACTGAGGATTAATGGACTTGAATCCGAGGAAGAGTCCAGTGGGGGCAGCCTTACAAACTTTG TGCCATCAGTCACAGCTTAG
AA sequence Show only first row Show all	>Lus10042973 pacid=23168410 polypeptide=Lus10042973 locus=Lus10042973.g ID=Lus10042973.BGIv1.0 annot-version=v1.0 MQRFVDSTLAVAKESVKTFTYESLHNVVRLIDGVSALLLTVLPGKANILEGLHGWELRPAFRGPRLPHWMENGVSSFNKFVHELSVDSDIDTSGSDYSSA EEDDEMYPPSPMSYGSRVSNAIPFKRKRGLLIGWVSSIISWIITPLQILLGFPLYFYGIFCTKRPTTPRQEETYHDSQSTPIKKVQSLKDLIIHRTTDKR RGVIEDLHLGIEISIEAVFDFFHKATQFFLSPTKILKAVYQWVFYDNYNREDIHSAVLDTNVPATTLGDDDPAPRERKATTQGALNTDARTCQDVITELG YPYEAIRVITSDGYVLLLERIPRRDSRKAVYLQHGVMDSSMGWVSNGVVGSPAFAAYDQGFDVFLGNLRGLVSREHVDKNISSRQYWRYSINEHGTADIP AMVQKIHDVKIAELRINGLESEEESSGGSLTNFVPSVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	0	1
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	2.6	0.8603
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	3.2	0.8690
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	3.3	0.9078
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	4.2	0.8865
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	4.7	0.8995
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	6.3	0.8360
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	7.9	0.8351
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	9.2	0.8298
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	9.8	0.8738
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	13.1	0.8368

Compare expression of checked genes

Lus10042973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.