Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18480 774 / 0 AtCASP CCAAT-displacement protein alternatively spliced product (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032478 [exp] 959 / 0 AT3G18480 900 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061000 [exp] 795 / 0 AT3G18480 987 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08172 [flax] [poplar] CASP_C CASP C terminal
Representative CDS sequence Show only first row Show all	>Lus10042975 pacid=23168308 polypeptide=Lus10042975 locus=Lus10042975.g ID=Lus10042975.BGIv1.0 annot-version=v1.0 ATGGAGTCTGTTCAGCAAGGAGGTCCCGAGCGGGACATGCCAATCCCTAGCTCTTCTCCTGTATCCGTCGTCTCCAATTTCTGGAAAGAATTCGACTTGG AAAAGGAGAAAATTGTGCTTGATGAGCAAGGTCTTAGAATAGCTGAAAATCAGGAGAACAGCCAGAAGAATCGACGGAAACTGGCTGAGAGCACTAGAGA TTTTAAGAAAGCTTCACCAGACGAAAAGTTAACTTTATTCAATTCCTTACTCAAGGGGTACCAAGAAGAAGTTGATAACCTTACCAAGAGAGCCAAATTT GGGGAAAATTCTTTTCTTAATATATATCAAAAGCTGTATGAGGCACCAGATCCTTATCCAGCACTTGCATCAATTTCTGAACTAGATCAAAAATTGTCTG AACTTGAATCAGAGAACCGGAAAATGAGACTAGAGCTGGAAGAATTTAGGACAGAAGCGACACATTTAAAGAATCAACAGTCTACAATAAGAAGACTAGA GGAGCGGAACCGTCAATTAGAACTACAGATTGCGGGGTTGCAATGTGGCATGCGATCCCTGCTGGGGAATGAAGACAGGGAGTTGAGCCTGGATATACTT CTCCTTTCTTTGTACGAGTGCTCTATATTTACTAAACTGGTAGTGTTTAGTTGTGCCTTAGGTGTGGGGCAGGAAGCTTCTGGAGATAAAGAGGATAGAA AGTCGAGCCTGGATATACTTCTCCTTTCTGTTTACTTGAAGCAGAATGTTAGTTACAGCAGATCCATGTTTCTTATCTTCTACACAAATAAACTTGAAAT AGTTGCTTTCCTGTTCCGGATGGAAGAAAAGGTAAAGGAAATTGTTGAGATGAAGCAGCGTAGTTTGGCTGAAGAAAATCAAAAAACCTTGGAGGTTTTA AAAGAGAGGGAGCAATTGTTGCAAGATCAACTACGGCAAGCTAAAGAAAGTGTTTCCACTATGCAGAAGTTGCATGAACTAGCTCAGAGCCAATTATTTG AAGTTCAAGCTCAATCAGATGAAGAAAGGGCTGCAAAGCAATCCGAGGTCACTCTTTTGATGGATGAAGTGGAGAGGGCTCAGACACGGCTTCTTAGCCT CGAGAGAGAAAAGGGTGTCCTGTGGTCGCAATTACAATCGGCAAATGAAGAAACGGGAAACAAGAAAAGTGACAATTTGGATTCTAGCAGTATGTTGGAG AATTCCCTGATTTCCAAAGAGAAAATTATTTCTGAACTAAACATGGAGCTTCACAACATTGAGACAACTTTAGCAAATGAGAGGGAACAACACATAAATG AGATAAAAAGGTTGAATGCATTGCTCAATGAGAAGGAAGTTTCTATTCAGGACTTGAAGAAAGAACTTCAAGCTAGGCCTACATCAAAACTAGTTGATGA CTTGCGTAAAAAGGTGAAAATCTTACAGGCAGTAGGCTATAACTCCATAGAGGCAGAAGATTGGGAAGCTGCAACAGTTGGGGAGGAAATGAGCAAGATG GAGTATCTTCTTCTTGATAAAAATCGGAAAATGGAACATCAACTGACACAATTGAAGGTCCAACTTTCTGAGAAAGCATCTTTACTGGACATAGCTGAAA GCAAGATTGCGGAGCTCACTATGAAGGCTAATGAGCAACTGAAGTTGATTCAAAAGTTGGAAGATGATATTTTGAAGGGTTATGGTTCCAAAGATCGAAA GGGGAGTTTGTTTGATGATTGGAACCTCTCAGAGGCTAGTGGAGCAGAGTTGTCTGAGCATACGGACCAGAAACATGTCTCCTCGGATCAAGACCAAAGT TCAATGCTGAAGGTGATATGCAATCAGCGAGATAGATTTAGAACACGTCTACATGATGCAGAAGAGGAGATAAGGCGACTGAAGGAGAGGATAGGAGTGC TGACTGAAGAGTTGGAAAAATCTAAAGCAGATAATGTTAAATTGTATGGAAAGATGCGTTATGTACAAGATTATAATCTTGAGAAAGTAGTTTCTCGAGG ATCAAAGAAGCATGCGGAGGATGTGGAAAGTGGTTTTAGCTCTGATGTGGAATCAAAGTACAAGAAGATATATGAAGATGACATGAATCCATTCGCAGCA TTTTCAAAGAAGGAAAGGGATCAACGGTACAAAGAGTTGGGTTTCAGGGATAGAATTACACTTAGCAGCGGACGTTTCCTTATGGGCAACAAGTATGCTC GTACTTTTGCGTTCTTCTACACGATCGGCTTGCACGTTTTGGTGTTCAGCTGTCTTTACCGAATGTCAGCTCTAAGCTACCTGGGCAATGGCGAGGAATC ACTGGTTGTCGATCAAACAACGGACCTCCCGCTTCCACGTGCACTTTGA
AA sequence Show only first row Show all	>Lus10042975 pacid=23168308 polypeptide=Lus10042975 locus=Lus10042975.g ID=Lus10042975.BGIv1.0 annot-version=v1.0 MESVQQGGPERDMPIPSSSPVSVVSNFWKEFDLEKEKIVLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPDEKLTLFNSLLKGYQEEVDNLTKRAKF GENSFLNIYQKLYEAPDPYPALASISELDQKLSELESENRKMRLELEEFRTEATHLKNQQSTIRRLEERNRQLELQIAGLQCGMRSLLGNEDRELSLDIL LLSLYECSIFTKLVVFSCALGVGQEASGDKEDRKSSLDILLLSVYLKQNVSYSRSMFLIFYTNKLEIVAFLFRMEEKVKEIVEMKQRSLAEENQKTLEVL KEREQLLQDQLRQAKESVSTMQKLHELAQSQLFEVQAQSDEERAAKQSEVTLLMDEVERAQTRLLSLEREKGVLWSQLQSANEETGNKKSDNLDSSSMLE NSLISKEKIISELNMELHNIETTLANEREQHINEIKRLNALLNEKEVSIQDLKKELQARPTSKLVDDLRKKVKILQAVGYNSIEAEDWEAATVGEEMSKM EYLLLDKNRKMEHQLTQLKVQLSEKASLLDIAESKIAELTMKANEQLKLIQKLEDDILKGYGSKDRKGSLFDDWNLSEASGAELSEHTDQKHVSSDQDQS SMLKVICNQRDRFRTRLHDAEEEIRRLKERIGVLTEELEKSKADNVKLYGKMRYVQDYNLEKVVSRGSKKHAEDVESGFSSDVESKYKKIYEDDMNPFAA FSKKERDQRYKELGFRDRITLSSGRFLMGNKYARTFAFFYTIGLHVLVFSCLYRMSALSYLGNGEESLVVDQTTDLPLPRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	0	1
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	1.0	0.9364
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	8.2	0.6920
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	10.0	0.7705
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	10.7	0.7535
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	11.8	0.7233
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	13.5	0.6208
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	15.3	0.6914
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	19.1	0.7548
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	20.6	0.7628
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	20.7	0.5761

Compare expression of checked genes

Lus10042975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.