Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18490 429 / 1e-146 Eukaryotic aspartyl protease family protein (.1) AT1G25510 399 / 3e-135 Eukaryotic aspartyl protease family protein (.1) AT1G01300 282 / 9e-90 Eukaryotic aspartyl protease family protein (.1) AT3G61820 278 / 5e-88 Eukaryotic aspartyl protease family protein (.1) AT3G20015 261 / 1e-81 Eukaryotic aspartyl protease family protein (.1) AT5G10760 176 / 2e-49 Eukaryotic aspartyl protease family protein (.1) AT3G59080 164 / 1e-44 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 162 / 7e-44 Eukaryotic aspartyl protease family protein (.1) AT5G10770 158 / 5e-43 Eukaryotic aspartyl protease family protein (.1) AT2G03200 153 / 4e-41 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032482 [exp] 443 / 4e-154 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 283 / 8e-90 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 240 / 3e-73 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 238 / 2e-72 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 205 / 4e-61 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 183 / 1e-51 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025702 [exp] 181 / 1e-49 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 176 / 1e-49 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 151 / 3e-40 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G051800 [exp] 457 / 1e-157 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 412 / 2e-140 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 288 / 4e-92 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 280 / 6e-89 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 277 / 1e-87 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 275 / 2e-86 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G118100 [exp] 207 / 1e-61 AT1G25510 373 / 8e-126 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 186 / 2e-52 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G014900 [exp] 181 / 2e-51 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 181 / 2e-51 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10042978 pacid=23168252 polypeptide=Lus10042978 locus=Lus10042978.g ID=Lus10042978.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCCGCACCTCCATTCCTCTTCCTCCCCATCTTCCTCACTCTCCTCACCCACACCTTCTCCCGCTCTCTCCCTCCTCCCCCTACCCACACTT CCCTCGACGTCTCCGCCTCTCTCACCCGAGCTCTCAACTTCCTCTCTCCCCACCACCAACAACAACAAGAAACTTCTCTCATCTCTCAACCCACCTTCCA CCACCTCAATGCCTCCTCTTCATTCTCCCTCGACCTCCTCTCCCGCGAATCAATCCTCACCTCCAACCACCACCAGGACTACAAATCCCTAGTCCTCTCC CGCCTCCGCCGCGACTCCGCCCGAGTCCAATCTCTCTCCGCCAAGCTCCTCCTCAAATCCTCCTACGACCAATTCCTCCCCCAGTCAACGGATCTGTCCA CTCCAATCACTTCCGGTTCCAACCAAGGCAGCGGCGAGTACTTCTCCCGGATCGGGGTCGGCACTCCGCCTCGTCCCTTCTATATGGTCCTCGACACCGG CAGCGACGTCAACTGGCTCCAGTGCGACCCTTGCGCTGACTGCTACACTCAAACCGATCCCATCTTCAACCCTTCATCTTCCTCTTCTTACTCACCTCTC ACCTGCGACTCAGCTCTTTGCTCTTCCCTCGAACTCTCCAGCTGCCGAGCCTCCAGCCAGTGTCTCTACCAGGTCAATTACGGTGACGGATCCTTCACCA CCGGAGATTTCGTCACCGAAACTGTTTCCTTCGGCTCTTCCTCGGGATCCGTTTCCAAAATTGCCCTCGGATGCGGCCACGACAACGAAGGCCTCTTCGT CGGCGCGGCGGGGCTTCTGGGCCTTGGAGGAGGCCCACTCTCCTTAACCTCGCAGCTCAAAGCGACGTCCTTCTCTTACTGCCTCGTTAATCGTGATTCC CCTGCGTCATCCTCCCTCGATTTCAACTCCGCTTTCCCCGGCGACGCCGTAACGGCTAGTTTAATCAAGAGCAGGAAGATCGATACCTTTTACTACGTCG GATTGAGCGGGATCAGCGTCGGAGGCCGGCTTCTGTCAATCCCGGCGGGGACCTTCGCGATCGACGAGTCAGGGAACGGAGGTATTATAGTTGATTGCGG GACCGCCATAACTCGGCTGCAGACTCAGGCGTACAACTCGCTTAGAGACGCGTTCTCCAGGTTGACGCCGAACCTGCGCCGCACGAGCGGGGTAGCGCTG TTCGACACGTGCTACGATATGTCCGGGATGTCGAGCGTGAAGGTTCCGACGGTGGCGTTCCATTTCGCCGGAGGGAAGACATGGAACTTGCCGGCGGCAA ACTACTTGATCCCGGTGGATGGGCAAGGGACGTTCTGCTTCGCGTTCGCGCCGACGACGTCGTCTCCGTGCGAGGCTCGGCCTCGCGTTCGCCCCGACGA CGTCGTCTCTGTCGATAATCGGGAACGTGCAGCAGCAGGGGACGCGCGTGAGCTTCGACCTGGTTAA
AA sequence Show only first row Show all	>Lus10042978 pacid=23168252 polypeptide=Lus10042978 locus=Lus10042978.g ID=Lus10042978.BGIv1.0 annot-version=v1.0 MAAAAPPFLFLPIFLTLLTHTFSRSLPPPPTHTSLDVSASLTRALNFLSPHHQQQQETSLISQPTFHHLNASSSFSLDLLSRESILTSNHHQDYKSLVLS RLRRDSARVQSLSAKLLLKSSYDQFLPQSTDLSTPITSGSNQGSGEYFSRIGVGTPPRPFYMVLDTGSDVNWLQCDPCADCYTQTDPIFNPSSSSSYSPL TCDSALCSSLELSSCRASSQCLYQVNYGDGSFTTGDFVTETVSFGSSSGSVSKIALGCGHDNEGLFVGAAGLLGLGGGPLSLTSQLKATSFSYCLVNRDS PASSSLDFNSAFPGDAVTASLIKSRKIDTFYYVGLSGISVGGRLLSIPAGTFAIDESGNGGIIVDCGTAITRLQTQAYNSLRDAFSRLTPNLRRTSGVAL FDTCYDMSGMSSVKVPTVAFHFAGGKTWNLPAANYLIPVDGQGTFCFAFAPTTSSPCEARPRVRPDDVVSVDNRERAAAGDARELRPG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	0	1
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	1.7	0.9382
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	3.5	0.8894
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	3.7	0.8839
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	3.9	0.9142
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	4.0	0.8811
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	4.5	0.9168
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	5.5	0.8807
AT5G49525			unknown protein		Lus10011181 [exp]	6.5	0.8625
AT4G40042			Microsomal signal peptidase 12...		Lus10011365 [exp]	6.9	0.8599
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	7.7	0.9019

Compare expression of checked genes

Lus10042978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.