Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 55 / 2e-07 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 44 / 0.0006 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010590 [exp] 419 / 2e-137 ND / Lus10014851 [exp] 292 / 4e-90 ND 34 / 0.005 Lus10003025 [exp] 276 / 7e-84 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 269 / 6e-79 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 263 / 2e-76 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025008 [exp] 247 / 9e-73 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034056 [exp] 224 / 3e-64 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10006887 [exp] 208 / 1e-56 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10026444 [exp] 197 / 3e-55 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061550 [exp] 62 / 1e-09 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 59 / 3e-09 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.015G057300 [exp] 51 / 2e-06 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.001G165480 [exp] 49 / 9e-06 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042979 pacid=23168003 polypeptide=Lus10042979 locus=Lus10042979.g ID=Lus10042979.BGIv1.0 annot-version=v1.0 ATGATGCTCCGTGAGATCGTCGTCGACAGCCCTCCGGCCGAACTCCTTTTGCGGCTGCAACACTTGTGGCGGCTAGGAAACCCATCTGACCCGTCGAATT TTTTTGCCGTCGGCACCTTGTGGACCGATGCCAAGGGGGTACGGGTTCAAGGTGACTCCCACAAAAACTTCCTGAAGGTCCTGGAAAAGCGGGTTACCGT TGGGTGCGTCTACAAGATTTCTGGCTACACCTTTCGCTCCCCACGTGATAAGTTTCGTGCATGCGAGTACCCGCACTGGTTGTCCTTGGTTCCAACGACG CAGTTTGACCTCGAGGTCTCGCCCGAAATGCCATTCAAAGCTGAGTCCTTCGAATTTGTTCGGTTCTCCAAACTTGCTTCTCGGAACCACCCATCCCCCT TTCTTGCAGATTTTGTTGGCAAACTCATTAAGGCTGGCAAACCAAATCATGTCCAGATCAAGAAAAATGTTTCCCCGGTTCAGTCCCTCACTGTGGCTGA TGAACGGGGCTTTGAAGTTGATGTGTCGCTTTGGGGGGACCTTTCTAACGTTATCGATCCTGATACGATCGTTCTTGATGATATGGCAAACCCGGTTATT GTTGCCTTCTCAGGCTTTCGTATGGGCGTCTATGAAGGGAGGACGGCCGCCTACAGTGGTGGGTGCCGGCCGGGGACGGCCGCCTACAGTGGTGGTGCCA GCCGAGTTTTTGTGGACCTGAAACATCCTATGGCCGACTTCCTTAGGACAGTGTTTGTCGCCCAACCTCGACAAATCCAGATTGTCGTTCCGAAATTCCC TACTCCAGAAACGTTACAACAACATCTTCCTGAATCTCAGCGCACCATTAATGAATTGCTTGATCTTATACTTCTGGTGGAGATTCGATATCGCTTGAAA CTCTTGGTGTCCGACGAGACCAACCAGACAATTTTTGTTCTGCTTGGCCAAGCTACATATGTTTTTCTGCTCGTTGACGAGCGTGGTGACATTTTTCCCC CCACCCCTGCCACTGAATTGGCCGTGGCATATCCACAACACTATGGTGAGCTCCCGCCTCCATTGAAAGCTTTGATCGGCCAGTGTGTGACCTTTGAGGT GCACCTTCCCCGTCATGTTCATGGTACTGCGCCTGGGGACTTTGTTATCAGCAAGATTTTGGGCCTCGTGGCCGAAGAAGTTTTTTGGCCCCGGGGGCCC AACGACAGCAGATCTTGCCCATTTCCCCCCCCCCTCCATTACGGCTGCCAAGGTTTGGACTTTTCTCTGGTCACACCTTCTTTTGATGCGATCCTTTGTG AAAATGGTTCTTCCGTTATGCTTGCAGCCCGCCTACACGGCATGATACGCCGATTCCCCCCGACCCTGCATATGTCTACCCGGTTCCAACTACTTTGCCT GGTGTTGTCCCTGCTTTACATGAAACTTCACAAAGTATTCCATGTTTCTTGCATCTGCCGGTTCAGTCTCATGGAAAGTCAGCCTTTTATGGTCCCTCCT ATACATGCCACTTCCTGTTCCTCTCCATTGTCCATGCTTGACCTTCCTGTTAGTGCACCTCCCACCCCTCATGTTTTATCGGGTAAACCAGATAGAGTGG GAACAAGTTTGGTTTGTGCGATTCCTGCAACACCAGCCCAAAAAAATGCTCGCTCTGTTGGTTCGTCATCAAAACCTGCATGGAAATCTGCACGTAATGC TGTTGTTGGTGGTGACCAGTGTGTGGAGGCTGACGATTCTGCTGAACTTCCCCTTGCAAGCTTTTTGCAAAAAAAACAGCGTAAGTCTAATCCACAAACT CCAACTGCATTTGCAGCCTCTACCACAGCTGCTCAGGCAGAGTCTGCGGCATTGTTTTCACATATCCATGTCCCTGTTCGCATGCTCCACCCAACTATGA AACATCTTTTCACATTCCTTCGAGGTGACTTGCCAGAGAATTTTTATCTATCCGCCCTTCTCAAACGGCACCCTTTCATGCCCCCGGACCGAAATTGGGC GTGGTGTTTGGTGCAGATACTTACATTCGATCGCAGCTCAAGCAACACTCTTTATGTTGATGGCCGGTTTAGTTACACTGTCCTTGCCAGCTGCGCGGAT GCAACAGCAACAACAACCATTTTGTTCGCAGGTACCGCAGCTTCCCTTTTATTTCGTATGCGTGCTGATGAATACGTATTGTTGTCTGATGCACAAGAAG AAGCACTCTTGGCCAGCCTCCATGACTGTAAGTTCATTGTTGAACTCCGCCCAATTGACCCCAGCCATATTGATCGGGCAAAGTTTGTCGCCATCACACT TTGGGACACTGTTGTGGCTTTTTACGAACAACCTTTAATCAGTTTCATGCTTCCTCCTATCTTCTACTCAAACATTGCCTCCTATGCTATCTTTCTCTTT ATTCATTGCTTAGTCATGGTTGCTACCTTATGTATTGTTACTGCCAGGACAATTTGCTAA
AA sequence Show only first row Show all	>Lus10042979 pacid=23168003 polypeptide=Lus10042979 locus=Lus10042979.g ID=Lus10042979.BGIv1.0 annot-version=v1.0 MMLREIVVDSPPAELLLRLQHLWRLGNPSDPSNFFAVGTLWTDAKGVRVQGDSHKNFLKVLEKRVTVGCVYKISGYTFRSPRDKFRACEYPHWLSLVPTT QFDLEVSPEMPFKAESFEFVRFSKLASRNHPSPFLADFVGKLIKAGKPNHVQIKKNVSPVQSLTVADERGFEVDVSLWGDLSNVIDPDTIVLDDMANPVI VAFSGFRMGVYEGRTAAYSGGCRPGTAAYSGGASRVFVDLKHPMADFLRTVFVAQPRQIQIVVPKFPTPETLQQHLPESQRTINELLDLILLVEIRYRLK LLVSDETNQTIFVLLGQATYVFLLVDERGDIFPPTPATELAVAYPQHYGELPPPLKALIGQCVTFEVHLPRHVHGTAPGDFVISKILGLVAEEVFWPRGP NDSRSCPFPPPLHYGCQGLDFSLVTPSFDAILCENGSSVMLAARLHGMIRRFPPTLHMSTRFQLLCLVLSLLYMKLHKVFHVSCICRFSLMESQPFMVPP IHATSCSSPLSMLDLPVSAPPTPHVLSGKPDRVGTSLVCAIPATPAQKNARSVGSSSKPAWKSARNAVVGGDQCVEADDSAELPLASFLQKKQRKSNPQT PTAFAASTTAAQAESAALFSHIHVPVRMLHPTMKHLFTFLRGDLPENFYLSALLKRHPFMPPDRNWAWCLVQILTFDRSSSNTLYVDGRFSYTVLASCAD ATATTTILFAGTAASLLFRMRADEYVLLSDAQEEALLASLHDCKFIVELRPIDPSHIDRAKFVAITLWDTVVAFYEQPLISFMLPPIFYSNIASYAIFLF IHCLVMVATLCIVTARTIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10042979 [exp]	0	1
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	2.8	0.8222
					Lus10035794 [exp]	3.9	0.6211
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	4.0	0.8222
					Lus10034545 [exp]	4.9	0.8222
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	5.7	0.8222
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	6.3	0.8222
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	7.3	0.7440
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	7.5	0.7108
					Lus10028981 [exp]	10.5	0.6496
AT1G17615			Disease resistance protein (TI...		Lus10018023 [exp]	11.5	0.6484

Compare expression of checked genes

Lus10042979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.