Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18450 550 / 0 ATARP4 actin-related protein 4 (.1) AT3G53750 233 / 9e-72 ACT3 actin 3 (.1) AT2G37620 233 / 9e-72 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 229 / 1e-70 ACT11 actin-11 (.1) AT5G09810 228 / 9e-70 ACT2/7, ACT7 actin 7 (.1) AT3G46520 224 / 2e-68 ACT12 actin-12 (.1) AT5G59370 224 / 2e-68 ACT4 actin 4 (.1.2) AT1G49240 222 / 9e-68 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 222 / 1e-67 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT2G42100 216 / 2e-65 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032484 [exp] 679 / 0 AT1G18450 690 / 0.0 actin-related protein 4 (.1) Lus10005819 [exp] 229 / 4e-70 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 229 / 4e-70 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 229 / 4e-70 AT5G09810 778 / 0.0 actin 7 (.1) Lus10029286 [exp] 226 / 4e-69 AT3G46520 768 / 0.0 actin-12 (.1) Lus10005163 [exp] 226 / 5e-69 AT3G12110 766 / 0.0 actin-11 (.1) Lus10001694 [exp] 226 / 5e-69 AT3G12110 766 / 0.0 actin-11 (.1) Lus10016558 [exp] 226 / 5e-69 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 226 / 5e-69 AT3G12110 768 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061300 [exp] 627 / 0 AT1G18450 705 / 0.0 actin-related protein 4 (.1) Potri.015G053100 [exp] 579 / 0 AT1G18450 682 / 0.0 actin-related protein 4 (.1) Potri.001G453600 [exp] 231 / 3e-71 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 225 / 5e-69 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 225 / 9e-69 AT5G09810 775 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 224 / 1e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 224 / 1e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 224 / 1e-68 AT5G09810 774 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 223 / 4e-68 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 223 / 5e-68 AT3G12110 765 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10042980 pacid=23168292 polypeptide=Lus10042980 locus=Lus10042980.g ID=Lus10042980.BGIv1.0 annot-version=v1.0 ATGTACGGAGGAGACGAAGTATCAGCCATTGTTATAGACTTGGGCTCACACACTTGCAAAGCTGGTTATGCTGGCGAGGATGCTCCCAAGGCCGTTTTCC CTTCTGTTGTTGGAGCTATTGATCAAATGGAGATTGATGACAACACAAATGGTGAGAAGAATTCTGCCGTGGATTCTAAAACTGGTCTCAAAGATTCTGA GCGGAAGGGTAATCGCAAGCTATATGTAGGCTCTCAATCCTTAGGATTTCGAAGGGACCATATGGAAGTGTTGTCACCCATAAAGGATGGAGTGGTCGTT GACTGGGATATTGTGGATAGCATATGGGACCATGCGTTTAGGGAATGTTTGCTGGTTGATCCGAAAGAGCACCCTATGCTACTTGCGGAACCTTCATCAA ACAGTCAACAGCAGAGAGAAAGGACTGTAGAGCTTATGTTCGAAAAGTATAATGTACCTGCGCTATTTTTGGCCAAGAATGCTGTATTGACTTCTTTTGC CTCAGGCCGTGCTACTGCCTTGGTTGTTGATAGCGGCGGAGGATCAACTACAGTAGCTCCTGTCCATGACGGCTATGTCCTTCAAAAGGCAGTTACTTCA TGTCCTATTGGTGGGGAATTTCTGTCTGATTGCTTGTTGAAAAGCTTAGAGAGCAAGGGCGTTGTGATCAAACCTAGGTACTCTTTCAAGAGAAAGGAAA TACGACCTGGTGACTTTCAGAGAGTAATTGCTAGTGACATCAAGGAATGCGTTTGTAGAGCTCCAGATGTACCCTATGATGAGGCATCATATTCAAACAT TCCAATGACTCCATATGAGCTTCCTGATGGCCAACAATTCCTGGTATTGCAAGTTTCGCGGAGATTGCTCCAAATGTCCGCGGTTTACCACAAATGGCAA GTAATAGACAGCATTAACAGGTGCGATGTGGATATTCGGAGAGAGTTGTTCAGTAGTATACTGCTTTCTGGAGGTACAGCATCAATGCAACAGCTAAAGG AGCGTCTTGAGAAAGACTTGATTGAGGAGTCTCCTCAAGCTGCTAGAGTCAAAGTGCTGGCTAGTGGAAATTCTACGGAAAGGAGATTCAGTGTGTGGAT TGGAGGAAGCATATTGGCATCTCTTGGCTCATTCCAGCAGATGTGGTTCTCCAAGGCAGAGCGCAAGACGAGAGCTACAATAGAGGCGAAACTTGCTGAG AAGGATGGTGAGATTGAAGCTGCTCGTGCTGAGATGAAAGTTGCTCGTGCTGAATGGGCAGTTGAGAGGGCAGGCATCGTAAGGTTGAAGGATATGTATA TAGATGTTCTTATTGATGAGTTGAAGGAGCAAGACTTAAGCGAAGAAGTTGTAGGAAAGTGGCAGGCCCCCTCGGTCAACAGCTGCTATAGTTGCCTAAA TCTGCCACTGTGGATGAAAGCTGTAACCCGTGGTCAAAAGCTGCAGAAAGCTGGAAATGTCTTGGAATCCTATAGACTAGTGGAGGGAATATGTTGTGGA ATATGCTGA
AA sequence Show only first row Show all	>Lus10042980 pacid=23168292 polypeptide=Lus10042980 locus=Lus10042980.g ID=Lus10042980.BGIv1.0 annot-version=v1.0 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMEIDDNTNGEKNSAVDSKTGLKDSERKGNRKLYVGSQSLGFRRDHMEVLSPIKDGVVV DWDIVDSIWDHAFRECLLVDPKEHPMLLAEPSSNSQQQRERTVELMFEKYNVPALFLAKNAVLTSFASGRATALVVDSGGGSTTVAPVHDGYVLQKAVTS CPIGGEFLSDCLLKSLESKGVVIKPRYSFKRKEIRPGDFQRVIASDIKECVCRAPDVPYDEASYSNIPMTPYELPDGQQFLVLQVSRRLLQMSAVYHKWQ VIDSINRCDVDIRRELFSSILLSGGTASMQQLKERLEKDLIEESPQAARVKVLASGNSTERRFSVWIGGSILASLGSFQQMWFSKAERKTRATIEAKLAE KDGEIEAARAEMKVARAEWAVERAGIVRLKDMYIDVLIDELKEQDLSEEVVGKWQAPSVNSCYSCLNLPLWMKAVTRGQKLQKAGNVLESYRLVEGICCG IC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	0	1
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	1.0	0.9289
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	1.7	0.9233
AT4G28200			unknown protein		Lus10003351 [exp]	4.5	0.9280
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	5.2	0.8993
AT1G77270			unknown protein		Lus10038311 [exp]	7.3	0.9067
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	7.5	0.9231
AT3G14120			unknown protein		Lus10015675 [exp]	11.0	0.9116
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10040776 [exp]	14.1	0.8215
AT4G32910			unknown protein		Lus10038723 [exp]	15.4	0.8963
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	15.5	0.8523

Compare expression of checked genes

Lus10042980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.