Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49050 570 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G77480 309 / 1e-99 Eukaryotic aspartyl protease family protein (.1.2) AT4G33490 304 / 7e-98 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 295 / 1e-94 Eukaryotic aspartyl protease family protein (.1) AT3G02740 150 / 2e-39 Eukaryotic aspartyl protease family protein (.1) AT2G36670 150 / 4e-39 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 150 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT1G65240 143 / 9e-37 Eukaryotic aspartyl protease family protein (.1) AT3G50050 143 / 3e-36 Eukaryotic aspartyl protease family protein (.1) AT5G36260 139 / 2e-35 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032485 [exp] 1019 / 0 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 314 / 2e-101 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 310 / 4e-100 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 308 / 3e-99 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 309 / 1e-98 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 160 / 2e-44 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 148 / 2e-38 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 146 / 1e-37 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 143 / 2e-36 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053300 [exp] 701 / 0 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 301 / 7e-97 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 293 / 3e-93 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.007G099200 [exp] 277 / 2e-87 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 276 / 4e-87 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 270 / 1e-84 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 145 / 1e-37 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 147 / 2e-37 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 144 / 5e-37 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.009G001700 [exp] 142 / 2e-36 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10042982 pacid=23168246 polypeptide=Lus10042982 locus=Lus10042982.g ID=Lus10042982.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGACTCAGCCACCGCCGCGATTTACGGGAGTAGTCATCATCCAACTTCCGCCGCCGGACAACCCTTCCGCCGGAAAAACAATTACAGCTT TCACGGTCACTGAAGACGATTATTACGGCGGCTACCCTCAATTACAACAACAAGACAACCATCAAAGCAGCACAACTCTCCAAGAAGAAGAAGAAGTAGG AGGAGGAAGCCGTCTTCCGGTACAACGTCCGATTCCGACCCGGTTACCGTACCCGAGAATCTTTCTCGGCATTTCGCTGTGCGCCGTGCTAATCTACGCC TCTCTGTTCTCGGATACCCTCCAGGAGGAGCTGAAGCGCTCCTCCAATGATGATGATCAAGGGCGGAGATCCTTCTTGCTTCCCTTGTATAACAAACTTG CTTCTCCTCCTGTTTTCGAAAAGGGAATTGAGCATACAGTTGGAAGATTGGTGTATAAGGAGAATTCAGTGGCGTTGATTGATCGTCCGATTGTAACACC ATTGAAAGTCAACAAGTTGTCCTCTTCTTCTTCAACTGCGGCTAAAGTGGGGGTGGACGCATCCCCGATTTTCCCTGTTAAAGGCAACATTTTCCCAGAT GGCTTTTATTATACGTATATTCTACTTGGAAGCCCTCCAAGGCCTTACTTCCTAGATATTGACACAGGAAGTGATTTGTCATGGATTCAGTGTGATGCTC CCTGTACTAGTTGTGCGAAGGGAGCAAATGATTTGTACAAGCCAAAAGCAAGCAACATTGTGCTTCCAGAGGATTCGTATTGCCTAGAAGTTCAGAGGAC TACGAAGGCTGAGAAGTGCAACGCATGCAAACAATGTGACTATGAGATCGAATATGCAGATCATAGCTCCTCTTTGGGCGTTCTTGCAAATGACGAGCTT CACCTAAGCAGTGAGAACGAGTCATTTAAGTCGAAGTTTACTTTTGGCTGTGCATATGATCAGCAAGGCTTCCTTTTGAACACTCTAGCAAGCACGGATG GAATCCTAGGATTGAGCAGAGCTAAAGTTAGTTTCCCATCTCAGCTGGCAAGGCAAGGAATTATCACTAATGTGGTAGGCCATTGCCTTACCACTGATGT GAGCGGTGGTGGGTATATGTTTCTTGGTGACGAGTTCCTGCCTCAACGGGGCGTTCGATGGGTCCCTATGCTCGATATCCCTTTCACGGACTTCTATCAG ACTGAGATTATGAAACTGACTTATGGAAGCAGCATCCTGAGTTTAGGGGGGAAAGGAGATAGACCGAGACGAGTAGTGTTTGATAGTGGCAGTTCTTTTA CTTATCTCACAAAAGATGCTTACTCTGAACTAGTAGCTTCTCTTAAGGAAGTCGCTAGGGCTGGTCTAATCCAAGATCCTTCCGACCTAGCAATGCCTCT CTGTTGGCGTGCAAAATCCCCGATTAGATCAGTCGCAGATGTGAAGCAGTATTTCAAGACTTTAACCCTTCAATTCGGAAGCAAGTGGTGGATTATCTCT AGGACGTTTCGAGTTCCTGCAGAGGGGTACCTGATCATCAGCGAGAAAGGCAATGTATGCTTGGGGATTCTTGATGGAAGCAAACTGCTTGATGGTTCCA CGATGATACTCGGTGATATATCAATGAGAGGGAAGCTGGTGGTGTATGACAATGAGAAGAAGAGAATAGGGTGGATGCCCTCTGACTGTGTGAAGCCCAG GAGACATGACCAGTTGCCACTCTTTGAGGGGTGA
AA sequence Show only first row Show all	>Lus10042982 pacid=23168246 polypeptide=Lus10042982 locus=Lus10042982.g ID=Lus10042982.BGIv1.0 annot-version=v1.0 MAEETQPPPRFTGVVIIQLPPPDNPSAGKTITAFTVTEDDYYGGYPQLQQQDNHQSSTTLQEEEEVGGGSRLPVQRPIPTRLPYPRIFLGISLCAVLIYA SLFSDTLQEELKRSSNDDDQGRRSFLLPLYNKLASPPVFEKGIEHTVGRLVYKENSVALIDRPIVTPLKVNKLSSSSSTAAKVGVDASPIFPVKGNIFPD GFYYTYILLGSPPRPYFLDIDTGSDLSWIQCDAPCTSCAKGANDLYKPKASNIVLPEDSYCLEVQRTTKAEKCNACKQCDYEIEYADHSSSLGVLANDEL HLSSENESFKSKFTFGCAYDQQGFLLNTLASTDGILGLSRAKVSFPSQLARQGIITNVVGHCLTTDVSGGGYMFLGDEFLPQRGVRWVPMLDIPFTDFYQ TEIMKLTYGSSILSLGGKGDRPRRVVFDSGSSFTYLTKDAYSELVASLKEVARAGLIQDPSDLAMPLCWRAKSPIRSVADVKQYFKTLTLQFGSKWWIIS RTFRVPAEGYLIISEKGNVCLGILDGSKLLDGSTMILGDISMRGKLVVYDNEKKRIGWMPSDCVKPRRHDQLPLFEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	0	1
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	1.0	0.9362
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	2.0	0.9252
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	3.5	0.8942
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	4.2	0.9039
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	7.9	0.8662
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	8.7	0.8938
AT4G25030			unknown protein		Lus10041414 [exp]	10.9	0.8885
AT1G62422			unknown protein		Lus10029957 [exp]	11.8	0.8313
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	11.8	0.8617
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10036484 [exp]	12.6	0.8555

Compare expression of checked genes

Lus10042982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.