Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10180 512 / 4e-180 FUS2, DET1, ATDET1 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032487 [exp] 781 / 0 AT4G10180 692 / 0.0 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161700 [exp] 602 / 0 AT4G10180 773 / 0.0 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09737 [flax] [poplar] Det1 De-etiolated protein 1 Det1
Representative CDS sequence Show only first row Show all	>Lus10042983 pacid=23168042 polypeptide=Lus10042983 locus=Lus10042983.g ID=Lus10042983.BGIv1.0 annot-version=v1.0 ATGGAGGGTAGTCAGTTTGGCCTTTTTGCTACTTCTACCACCCAAATTCAGGATACTCCTACTGTTGGAGGTGCAATCCAGGGAGTCCCATCTTTCGAGA GGATTACATTTCATCTCTTGAGATTGGAAGATGGAACGGTACTTGATGAGAAGGTCTTTCAGAATGATTATGTTAATCTGAATCATGAAATGGGCGTCTT ATATGATGATCTGCTAGCGATTGTGTCAATTCGATATCAAAGGATTCAGATTCTCCAAATCAGGGAATCTGGCCACCTTGTAGATGTACGTGCTATAGGT TCATTCTGTCATGAAGATGATGAGCTTTTTCTCAATTCTAGCACTCAGTTCATGCACCAACGCTCGGAGAATCATGGTGAAAATGGTTCACATGTTACCA GTATGGACGGTTGCTTTTTGAGCGGTATCAAGCAACGTTTGCTGTCCTTTATTTTCCGAGGATTATGGAATGAAGAAGTTGACAAATCACTGGCAGTTCA ATCAATGAAGAAGAAGTTCTATTTCCACTTTCAAGATTATGTTGATCTGATTATCTGGAAGGTACAGTTTCTGGATCGTCATCACCTGCTTATCAAGTTT GGCAGTGTAGATGGAGTGCTTCAATACTCGCGAAGCTCTGATCACCATCCATCATTCTATGCAGTATATAATATGGAGACAGCTGAAGTTGTTGCATTTT ACCCGAATTCAGCATTCGAACTTTACGCCTTGTTTGAGCAGTTCTGCGATCACTTTTATTCAGCATCAAGAAATTTGTTGCATATAAAATTTATATCATC CCACTCTAATAACATCCATGCTCTTGACCAACTACGGTCTATGAAGAATAAAGCCAGCAGCTCTCTCCAGTTCATAAGAAAGATGCTTGCTTCTCTGCCT TTCAGTTGTCAATCTCAAAGTCCTTCTCCCTACTTTGACCAGTCTCTTTTCCGTTATGATGAAAAGTTGATCTCTGCATCTGAGAGACATAGAACATCAG TGGATCATCCGATCAAGTTCATTTCGAGAAGGCAGCCGTGTATGCTCAAGTTCAAGATAAAGCCAGGTCCCGAAGCGGGTAATGTGGATAATCGGACGAG AAAGGCGTCATCGTTCCTCTTCCATCCTTTTCTGCCACTGGCTCTCTCCATCCAACAATCTATGCATTTCCCACCATCAATGAATATTCATTTCAGGCAA TAA
AA sequence Show only first row Show all	>Lus10042983 pacid=23168042 polypeptide=Lus10042983 locus=Lus10042983.g ID=Lus10042983.BGIv1.0 annot-version=v1.0 MEGSQFGLFATSTTQIQDTPTVGGAIQGVPSFERITFHLLRLEDGTVLDEKVFQNDYVNLNHEMGVLYDDLLAIVSIRYQRIQILQIRESGHLVDVRAIG SFCHEDDELFLNSSTQFMHQRSENHGENGSHVTSMDGCFLSGIKQRLLSFIFRGLWNEEVDKSLAVQSMKKKFYFHFQDYVDLIIWKVQFLDRHHLLIKF GSVDGVLQYSRSSDHHPSFYAVYNMETAEVVAFYPNSAFELYALFEQFCDHFYSASRNLLHIKFISSHSNNIHALDQLRSMKNKASSSLQFIRKMLASLP FSCQSQSPSPYFDQSLFRYDEKLISASERHRTSVDHPIKFISRRQPCMLKFKIKPGPEAGNVDNRTRKASSFLFHPFLPLALSIQQSMHFPPSMNIHFRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	0	1
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	1.4	0.8564
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	2.0	0.8449
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	3.0	0.7620
AT5G16610			unknown protein		Lus10010975 [exp]	3.0	0.7936
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	5.5	0.7775
AT1G17665			unknown protein		Lus10006153 [exp]	5.5	0.7474
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	6.9	0.7068
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	8.1	0.7450
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	9.5	0.7727
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	10.6	0.7340

Compare expression of checked genes

Lus10042983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.